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Journal ArticleDOI

Ab initio calculations on halogen-bonded complexes and comparison with density functional methods

TLDR
The calculations described herein have shown that the CCSD(T) CBS limits yield binding energies with a range of −0.89 to −4.38 kcal/mol for the halogen‐bonded complexes under study.
Abstract
A systematic theoretical investigation on a series of dimeric complexes formed between some halocarbon molecules and electron donors has been carried out by employing both ab initio and density functional methods. Full geometry optimizations are performed at the Moller-Plesset second-order perturbation (MP2) level of theory with the Dunning's correlation-consistent basis set, aug-cc-pVDZ. Binding energies are extrapolated to the complete basis set (CBS) limit by means of two most commonly used extrapolation methods and the aug-cc-pVXZ (X = D, T, Q) basis sets series. The coupled cluster with single, double, and noniterative triple excitations [CCSD(T)] correction term, determined as a difference between CCSD(T) and MP2 binding energies, is estimated with the aug-cc-pVDZ basis set. In general, the inclusion of higher-order electron correlation effects leads to a repulsive correction with respect to those predicted at the MP2 level. The calculations described herein have shown that the CCSD(T) CBS limits yield binding energies with a range of -0.89 to -4.38 kcal/mol for the halogen-bonded complexes under study. The performance of several density functional theory (DFT) methods has been evaluated comparing the results with those obtained from MP2 and CCSD(T). It is shown that PBEKCIS, B97-1, and MPWLYP functionals provide accuracies close to the computationally very expensive ab initio methods.

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Citations
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Journal ArticleDOI

Principles and applications of halogen bonding in medicinal chemistry and chemical biology.

TL;DR: The theoretical background defining its strength and directionality, a systematic analysis of its occurrence and interaction geometries in protein-ligand complexes, and recent examples where halogen bonding has been successfully harnessed for lead identification and optimization are provided.
Journal ArticleDOI

Halogen bonding--a novel interaction for rational drug design?

TL;DR: A detailed analysis of the interactions reveals that halogen bonding interactions are responsible for the different conformation of the molecules in the active site and single-point energy calculations unveil that the interaction becomes comparable in magnitude to classical hydrogen bonding.
Journal ArticleDOI

Halogen atoms in the modern medicinal chemistry: hints for the drug design.

TL;DR: This review serves as one guide for the virtual screening of libraries containing halogenated drugs and their structural and pharmacological features and may be a source of inspiration for the medicinal chemists.
Journal ArticleDOI

Halogen Bonds: Benchmarks and Theoretical Analysis

TL;DR: An extensive survey of wave function and DFT methods to test their accuracy on geometries and dissociation energies of halogen bonds (XB) found that functionals with high exact exchange or long-range corrections were suitable for these dimers, especially M06-2X, ωB97XD, and double hybrids.
Journal ArticleDOI

Halogen bond tunability I: the effects of aromatic fluorine substitution on the strengths of halogen-bonding interactions involving chlorine, bromine, and iodine

TL;DR: It is seen that the substitution of fluorines in systems containing smaller halogens results in electrostatic potentials resembling those of systems with larger halogens, with correspondingly stronger interaction energies, and it is shown that aromatic fluorine substitutions affect the optimal geometries of the halogen-bonded complexes.
References
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Journal ArticleDOI

Generalized Gradient Approximation Made Simple

TL;DR: A simple derivation of a simple GGA is presented, in which all parameters (other than those in LSD) are fundamental constants, and only general features of the detailed construction underlying the Perdew-Wang 1991 (PW91) GGA are invoked.
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Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

TL;DR: Numerical calculations on a number of atoms, positive ions, and molecules, of both open- and closed-shell type, show that density-functional formulas for the correlation energy and correlation potential give correlation energies within a few percent.
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Density-functional exchange-energy approximation with correct asymptotic behavior.

TL;DR: This work reports a gradient-corrected exchange-energy functional, containing only one parameter, that fits the exact Hartree-Fock exchange energies of a wide variety of atomic systems with remarkable accuracy, surpassing the performance of previous functionals containing two parameters or more.
Journal ArticleDOI

Accurate and simple analytic representation of the electron-gas correlation energy

TL;DR: A simple analytic representation of the correlation energy for a uniform electron gas, as a function of density parameter and relative spin polarization \ensuremath{\zeta}, which confirms the practical accuracy of the VWN and PZ representations and eliminates some minor problems.
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The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors

TL;DR: In this paper, a direct difference method for the computation of molecular interactions has been based on a bivariational transcorrelated treatment, together with special methods for the balancing of other errors.
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