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Open AccessJournal ArticleDOI

Complex networks: Structure and dynamics

TLDR
The major concepts and results recently achieved in the study of the structure and dynamics of complex networks are reviewed, and the relevant applications of these ideas in many different disciplines are summarized, ranging from nonlinear science to biology, from statistical mechanics to medicine and engineering.
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This article is published in Physics Reports.The article was published on 2006-02-01 and is currently open access. It has received 9441 citations till now. The article focuses on the topics: Network dynamics & Complex network.

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Laplacian spectra as a diagnostic tool for network structure and dynamics.

TL;DR: The effects of clustering, degree distribution, and a particular type of coupling asymmetry (input normalization), all of which are known to have effects on the synchronizability of oscillator networks, are studied.
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Random Walks on Simplicial Complexes and the normalized Hodge 1-Laplacian

TL;DR: Using graphs to model pairwise relationships between entities is a ubiquitous framework for studying complex systems and data and Simplicial complexes extend this dyadic model of graphs to polyadic structures.
Journal ArticleDOI

Drug repurposing for COVID-19 via knowledge graph completion.

TL;DR: It is shown that a LBD approach can be feasible not only for discovering drug candidates for COVID-19, but also for generating mechanistic explanations and can be generalized to other diseases as well as to other clinical questions.
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Network Reconstruction from Random Phase Resetting

TL;DR: An ensemble of initial phases and the corresponding instantaneous frequencies is constructed by repeating random phase resets of the system dynamics, and the desired details of network structure are revealed by appropriately averaging over the ensemble.
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Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect?

TL;DR: It is found that cortical networks lack scale-free behavior, but show a small, but significant small-world structure, and assuming a simple distance-dependent probabilistic wiring between neurons, this connectivity structure can account for all of the networks’ observed small- world ness.
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Journal ArticleDOI

Optimization by Simulated Annealing

TL;DR: There is a deep and useful connection between statistical mechanics and multivariate or combinatorial optimization (finding the minimum of a given function depending on many parameters), and a detailed analogy with annealing in solids provides a framework for optimization of very large and complex systems.
Book

Computers and Intractability: A Guide to the Theory of NP-Completeness

TL;DR: The second edition of a quarterly column as discussed by the authors provides a continuing update to the list of problems (NP-complete and harder) presented by M. R. Garey and myself in our book "Computers and Intractability: A Guide to the Theory of NP-Completeness,” W. H. Freeman & Co., San Francisco, 1979.
Journal ArticleDOI

Collective dynamics of small-world networks

TL;DR: Simple models of networks that can be tuned through this middle ground: regular networks ‘rewired’ to introduce increasing amounts of disorder are explored, finding that these systems can be highly clustered, like regular lattices, yet have small characteristic path lengths, like random graphs.
Book

Matrix computations

Gene H. Golub
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The authors review the major concepts and results recently achieved in the study of the structure and dynamics of complex networks, and summarize the relevant applications of these ideas in many different disciplines, ranging from nonlinear science to biology, from statistical mechanics to medicine and engineering.