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Disease-linked TDP-43 hyperphosphorylation suppresses TDP-43 condensation and aggregation

TLDR
This article showed that TDP-43 hyperphosphorylation by Casein kinase 1δ or C-terminal phosphomimetic mutations surprisingly reduced phase separation and aggregation, and rendered the protein more liquid-like and dynamic.
Abstract
Post-translational modifications (PTMs) have emerged as key modulators of protein phase separation and have been linked to protein aggregation in neurodegenerative disorders. The major aggregating protein in amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), the RNA-binding protein TDP-43, is hyperphosphorylated in disease on several C-terminal serine residues, which is generally believed to promote TDP-43 aggregation. Here, we show that hyperphosphorylation by Casein kinase 1δ or C-terminal phosphomimetic mutations surprisingly reduce TDP-43 phase separation and aggregation and render TDP-43 condensates more liquid-like and dynamic. Multi-scale simulations reveal reduced homotypic interactions of TDP-43 low complexity domains through enhanced solvation of phosphomimetic residues. Cellular experiments show that phosphomimetic substitutions do not affect nuclear import or RNA regulatory functions of TDP-43, but suppress accumulation of TDP-43 in membrane-less organelles and promote its solubility in neurons. We propose that TDP-43 hyperphosphorylation may be a protective cellular response to counteract TDP-43 aggregation.

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Post-translational modifications on RNA-binding proteins: accelerators, brakes, or passengers in neurodegeneration?

TL;DR: In this article, post-translational modifications (PTMs) have been used to regulate RNA-binding proteins (RBPs), which allow the cell to quickly and efficiently respond to cellular and environmental stimuli.
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TDP-43 pathology: From noxious assembly to therapeutic removal

TL;DR: In this article , the authors explore how the pathogenic changes to TDP-43, including mislocalisation, misfolding, aberrant liquid-liquid phase separation, stress granule assembly, oligomerization, and post-translational modification, drive diseaseassociated aggregation in TDP43 proteinopathies.
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Heterotypic electrostatic interactions control complex phase separation of tau and prion into multiphasic condensates and co-aggregates

TL;DR: These studies unveil an intriguing orchestra of molecular events associated with the formation of heterotypic condensates comprising ephemeral, domain-specific, short-range electrostatic nanoclusters and provide mechanistic underpinnings of overlapping neuropathology involving tau and PrP and highlight a broader role of complex phase transitions in physiology and disease.
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Biophysical characterization of full‐length TAR DNA‐binding protein (TDP‐43) phase separation

TL;DR: In this article , a phase separation of full-length TAR DNA-binding protein 43 (TDP•43) was performed using a solution-jump method and monitored with an array of biophysical techniques, including confocal fluorescence, bright field and stimulated emission depletion microscopy.
References
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TL;DR: In this paper, a new Lagrangian formulation is introduced to make molecular dynamics (MD) calculations on systems under the most general externally applied, conditions of stress, which is well suited to the study of structural transformations in solids under external stress and at finite temperature.
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Canonical sampling through velocity rescaling

TL;DR: In this paper, the authors present a new molecular dynamics algorithm for sampling the canonical distribution, where the velocities of all the particles are rescaled by a properly chosen random factor.
Journal ArticleDOI

The MARTINI force field : Coarse grained model for biomolecular simulations

TL;DR: An improved and extended version of the coarse grained lipid model is presented, coined the MARTINI force field, based on the reproduction of partitioning free energies between polar and apolar phases of a large number of chemical compounds to reproduce the free energies of these chemical building blocks.
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