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Open AccessJournal ArticleDOI

Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics

TLDR
This review gives a detailed overview of the versatile functions of lipopeptides in the biology of Pseudomonas and Bacillus species, and highlights their role in competitive interactions with coexisting organisms, including bacteria, fungi, oomycetes, protozoa, nematodes and plants.
Abstract
Lipopeptides constitute a structurally diverse group of metabolites produced by various bacterial and fungal genera. In the past decades, research on lipopeptides has been fueled by their antimicrobial, antitumour, immunosuppressant and surfactant activities. However, the natural functions of lipopeptides in the lifestyles of the producing microorganisms have received considerably less attention. The substantial structural diversity of lipopeptides suggests that these metabolites have different natural roles, some of which may be unique to the biology of the producing organism. This review gives a detailed overview of the versatile functions of lipopeptides in the biology of Pseudomonas and Bacillus species, and highlights their role in competitive interactions with coexisting organisms, including bacteria, fungi, oomycetes, protozoa, nematodes and plants. Their functions in cell motility, leading to colonization of novel habitats, and in the formation and development of highly structured biofilms are discussed in detail. Finally, this review provides an update on lipopeptide detection and discovery as well as on novel regulatory mechanisms and genes involved in lipopeptide biosynthesis in these two bacterial genera.

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The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms

TL;DR: The main functions of rhizosphere microorganisms and how they impact on health and disease are reviewed and several strategies to redirect or reshape the rhizospheric microbiome in favor of microorganisms that are beneficial to plant growth and health are highlighted.
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Plant growth-promoting rhizobacteria (PGPR): their potential as antagonists and biocontrol agents

TL;DR: Resistance-inducing and antagonistic rhizobacteria might be useful in formulating new inoculants with combinations of different mechanisms of action, leading to a more efficient use for biocontrol strategies to improve cropping systems.
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Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

TL;DR: A comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences found genes for traits that were not known previously in the strains, highlighting the enormous heterogeneity of the P. fluorescenceens group and the importance of the variable genome in tailoring individual strains to their specific lifestyles and functional repertoire.
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Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42 – a review

TL;DR: Adding FZB42 to plants compensate, at least in part, changes in the community structure caused by the pathogen, indicating an interesting mechanism of plant protection by beneficial Bacilli.
Journal ArticleDOI

Unraveling the plant microbiome: looking back and future perspectives

TL;DR: This mini-review acting as editorial presents retrospectives and future perspectives for plant microbiome studies as well as information gaps in this emerging research field and the contribution of this research topic to the solution of various issues is discussed.
References
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Journal ArticleDOI

Bacterial biofilms: from the natural environment to infectious diseases.

TL;DR: It is evident that biofilm formation is an ancient and integral component of the prokaryotic life cycle, and is a key factor for survival in diverse environments.
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Biological control of soil-borne pathogens by fluorescent pseudomonads

TL;DR: Biocontrol strains of fluorescent pseudomonads produce antifungal antibiotics, elicit induced systemic resistance in the host plant or interfere specifically with fungal pathogenicity factors during root colonization.
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Microbial production of surfactants and their commercial potential.

TL;DR: Biosurfactants are more effective, selective, environmentally friendly, and stable than many synthetic surfactants, and the most promising applications are cleaning of oil-contaminated tankers, oil spill management, transportation of heavy crude oil, enhanced oil recovery, recovery of crude oil from sludge, and bioremediation of sites contaminated with hydrocarbons, heavy metals, and other pollutants.
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Physiological heterogeneity in biofilms.

TL;DR: The processes that generate chemical gradients inBiofilms, the genetic and physiological responses of the bacteria as they adapt to these gradients and the techniques that can be used to visualize and measure the microscale physiological heterogeneities of bacteria in biofilms are discussed.
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Microbiology of the Phyllosphere

TL;DR: The above-ground parts of plants are normally colonized by a variety of bacteria, yeasts, and fungi, which can be isolated from within plant tissues, but many more are recovered from the surfaces of healthy plants.
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