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On-Site Detection of SARS-CoV-2 Antigen by Deep Learning-Based Surface-Enhanced Raman Spectroscopy and Its Biochemical Foundations.

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TLDR
In this article, a deep learning-based surface-enhanced Raman spectroscopy technique was developed for the sensitive, rapid, and on-site detection of the SARS-CoV-2 antigen in the throat swabs or sputum from 30 confirmed COVID-19 patients.
Abstract
A rapid, on-site, and accurate SARS-CoV-2 detection method is crucial for the prevention and control of the COVID-19 epidemic. However, such an ideal screening technology has not yet been developed for the diagnosis of SARS-CoV-2. Here, we have developed a deep learning-based surface-enhanced Raman spectroscopy technique for the sensitive, rapid, and on-site detection of the SARS-CoV-2 antigen in the throat swabs or sputum from 30 confirmed COVID-19 patients. A Raman database based on the spike protein of SARS-CoV-2 was established from experiments and theoretical calculations. The corresponding biochemical foundation for this method is also discussed. The deep learning model could predict the SARS-CoV-2 antigen with an identification accuracy of 87.7%. These results suggested that this method has great potential for the diagnosis, monitoring, and control of SARS-CoV-2 worldwide.

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Journal ArticleDOI

Label-Free Spectroscopic SARS-CoV-2 Detection on Versatile Nanoimprinted Substrates

TL;DR: A large-area and label-free testing platform that combines surface-enhanced Raman spectroscopy and machine learning for the rapid and accurate detection of SARS-CoV-2, and envision that it will offer an important tool for virus detection and future outbreak preparedness.
Journal ArticleDOI

Surface-enhanced Raman scattering-based immunoassay for severe acute respiratory syndrome coronavirus 2

TL;DR: A surface-enhanced Raman scattering (SERS)-based immunoassay involving an antibody pair, SERS-active hollow Au nanoparticles (NPs), and magnetic beads for the detection of SARS-CoV-2 was presented in this article .
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Performance of Antigen Detection Tests for SARS-CoV-2: A Systematic Review and Meta-Analysis

TL;DR: LFIA tests, though with moderate sensitivity, appear as the most attractive method for use in POCs and for performing seroprevalence studies, and rapid ATs show higher sensitivity in symptomatic patients compared to asymptomatic patients.
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Probing the mutation independent interaction of DNA probes with SARS-CoV-2 variants through a combination of surface-enhanced Raman scattering and machine learning

TL;DR: In this article , a set of DNA probes targeting a specific segment of the nucleocapsid phosphoprotein (N) gene of SARS-CoV-2 with high binding efficiency was developed.
Journal ArticleDOI

High-sensitivity and point-of-care detection of SARS-CoV-2 from nasal and throat swabs by magnetic SERS biosensor

TL;DR: In this article , a point-of-care detection method based on magnetic SERS biosensor composed of Fe3O4-Au nanocomposite and Au nanoneedles array was developed to detect SARS-CoV-2 directly.
References
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Journal ArticleDOI

A highly conserved cryptic epitope in the receptor binding domains of SARS-CoV-2 and SARS-CoV.

TL;DR: The crystal structure of CR3022, a neutralizing antibody previously isolated from a convalescent SARS patient, in complex with the receptor binding domain (RBD) of the SARS-CoV-2 spike (S) protein at 3.1-angstrom resolution is determined, providing molecular insights into antibody recognition of Sars-Cov-2.
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Site-specific glycan analysis of the SARS-CoV-2 spike.

TL;DR: It is shown how SARS-CoV-2 S glycans differ from typical host glycan processing, which may have implications in viral pathobiology and vaccine design, and enables mapping of the glycan-processing states across the trimeric viral spike.
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Nanostructure-based plasmon-enhanced Raman spectroscopy for surface analysis of materials

TL;DR: A review of the plasmon-enhanced Raman spectroscopy (PERS) field can be found in this paper, where a new generation of hotspots that are generated from hybrid structures combining PERS-active nanostructures and probe materials are discussed.
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Reference database of Raman spectra of biological molecules

TL;DR: A collection of Raman spectra of biomolecules that can serve as references for the interpretation of biological materials is presented in this paper, where the most important components present in a cell are included.
Journal ArticleDOI

Surface-Enhanced Raman Spectroscopy for Bioanalysis: Reliability and Challenges

TL;DR: An outlook of the key challenges in bioanalytical SERS, including reproducibility, sensitivity, and spatial and time resolution is given.
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