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Journal ArticleDOI

Role of Digital Microfluidics in Enabling Access to Laboratory Automation and Making Biology Programmable

Varun B. Kothamachu, +2 more
- Vol. 25, Iss: 5, pp 411-426
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TLDR
How the function of a DMF device within a fully integrated pipeline for the production of novel organisms and biomolecules is highly dependent on integration with different sensing techniques and methodologies from machine learning and big data is discussed.
Abstract
Digital microfluidics (DMF) is a liquid handling technique that has been demonstrated to automate biological experimentation in a low-cost, rapid, and programmable manner This review discusses the role of DMF as a "digital bioconverter"-a tool to connect the digital aspects of the design-build-learn cycle with the physical execution of experiments Several applications are reviewed to demonstrate the utility of DMF as a digital bioconverter, namely, genetic engineering, sample preparation for sequencing and mass spectrometry, and enzyme-, immuno-, and cell-based screening assays These applications show that DMF has great potential in the role of a centralized execution platform in a fully integrated pipeline for the production of novel organisms and biomolecules In this paper, we discuss how the function of a DMF device within such a pipeline is highly dependent on integration with different sensing techniques and methodologies from machine learning and big data In addition to that, we examine how the capacity of DMF can in some cases be limited by known technical and operational challenges and how consolidated efforts in overcoming these challenges will be key to the development of DMF as a major enabling technology in the computer-aided biology framework

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Journal ArticleDOI

Machine learning for metabolic engineering: A review.

TL;DR: This review offers an introduction to this discipline in terms that are relatable to metabolic engineers, as well as providing in-depth illustrative examples leveraging omics data and improving production.
Journal ArticleDOI

On-the-Fly Mass Spectrometry in Digital Microfluidics Enabled by a Microspray Hole: Toward Multidimensional Reaction Monitoring in Automated Synthesis Platforms.

TL;DR: In this paper , the authors report an approach for the online coupling of digital microfluidics (DMF) with mass spectrometry (MS) using a chip-integrated micro-spray hole (μSH).
Journal ArticleDOI

Fast biofoundries: coping with the challenges of biomanufacturing

TL;DR: In this paper , a survey of technological solutions in bio-foundries and their advantages and limitations is presented, along with possible pathways towards the creation of a functional, early-phase biofoundry, and strategies towards long-term sustainability.
Journal ArticleDOI

Isobaric Peptide Labeling on Digital Microfluidics for Quantitative Low Cell Number Proteomics

TL;DR: In this article, the maltoside-based detergent 3-dodecyloxypropyl-1-β-d-maltopyranoside (DDOPM) was used to enable facile droplet movement and showed micelle formation even in the presence of organic solvent, which is necessary for isobaric tandem mass tag (TMT) labeling.
Journal ArticleDOI

Co-planar light-actuated optoelectrowetting microfluidic device for droplet manipulation

TL;DR: In this paper, a metal mesh grid is integrated on the device surface to allow droplets to be exposed from above, allowing for the optimization of droplet actuation while maintaining reliable droplet movement.
References
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TL;DR: In this paper, the authors describe the development and applications of Cas9 for a variety of research or translational applications while highlighting challenges as well as future directions, and highlight challenges and future directions.

Development and Applications of CRISPR-Cas9 for Genome Engineering

TL;DR: The development and applications of Cas9 are described for a variety of research or translational applications while highlighting challenges as well as future directions.
Journal ArticleDOI

1,500 scientists lift the lid on reproducibility

Monya Baker
- 26 May 2016 - 
Journal ArticleDOI

The ImageJ ecosystem: An open platform for biomedical image analysis

TL;DR: The ImageJ project is used as a case study of how open‐source software fosters its suites of software tools, making multitudes of image‐analysis technology easily accessible to the scientific community.
Journal ArticleDOI

Electrowetting: from basics to applications

TL;DR: In this paper, the authors compare the various approaches used to derive the basic electrowetting equation, which has been shown to be very reliable as long as the applied voltage is not too high.
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Digital microfluidics (DMF) serves as a digital bioconverter, automating biological experiments like genetic engineering, sample preparation, and screening assays, enabling programmable and centralized execution in cellular biology.