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The replication fork trap and termination of chromosome replication.

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TLDR
This work reviews the research that led to the replication fork trap theory, and aims to integrate several recent findings that contribute towards an understanding of the physiological roles of the replication forks trap.
Abstract
Bacteria that have a circular chromosome with a bidirectional DNA replication origin are thought to utilize a 'replication fork trap' to control termination of replication. The fork trap is an arrangement of replication pause sites that ensures that the two replication forks fuse within the terminus region of the chromosome, approximately opposite the origin on the circular map. However, the biological significance of the replication fork trap has been mysterious, as its inactivation has no obvious consequence. Here we review the research that led to the replication fork trap theory, and we aim to integrate several recent findings that contribute towards an understanding of the physiological roles of the replication fork trap. Likely roles include the prevention of over-replication, and the optimization of post-replicative mechanisms of chromosome segregation, such as that involving FtsK in Escherichia coli.

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Journal ArticleDOI

Replication fork reversal in eukaryotes: from dead end to dynamic response.

TL;DR: The study of the putative in vivo roles of recently identified eukaryotic factors in fork remodelling promises to shed new light on mechanisms of genome maintenance and to provide novel attractive targets for cancer therapy.
Journal ArticleDOI

Organization and segregation of bacterial chromosomes

TL;DR: It is argued that the key feature of compaction is the orderly folding of DNA along adjacent segments and that this organization provides easy and efficient access for protein–DNA transactions and has a central role in driving segregation.
Journal ArticleDOI

Replication Termination at Eukaryotic Chromosomes Is Mediated by Top2 and Occurs at Genomic Loci Containing Pausing Elements

TL;DR: It is proposed that in eukaryotes, replication fork barriers, Rrm3, and Top2 coordinate replication fork progression and fusion at TERs, thus counteracting abnormal genomic transitions.
Journal ArticleDOI

Mechanisms of DNA replication termination

TL;DR: The recently discovered E3 ubiquitin ligases that control replisome disassembly in yeast and higher eukaryotes are discussed, and how their activity is regulated to avoid genome instability.
Journal ArticleDOI

Is RecG a general guardian of the bacterial genome

TL;DR: It is concluded that RecG may be both a specialist activity and a general guardian of the genome through the ability of RecG to eliminate substrates that the replication restart protein, PriA, could otherwise exploit to re-replicate the chromosome.
References
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Journal ArticleDOI

Asymmetric substitution patterns in the two DNA strands of bacteria.

TL;DR: Analyses of the genomes of three prokaryotes revealed a new type of genomic compartmentalization of base frequencies, showing that the substitution patterns of the two strands of DNA were asymmetric.
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Initiation of genetic recombination and recombination-dependent replication.

TL;DR: The initial steps common to these recombination and recombination-dependent replication processes are reviewed and the machinery of homologous recombination acts at these breaks and gaps to promote the events that result in gene recombination.
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Analyzing genomes with cumulative skew diagrams.

TL;DR: Analysis of the diagrams of viral and mitochondrial genomes suggests a link between the base composition bias and the time spent by DNA in a single stranded state during replication.
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Multiple pathways process stalled replication forks.

TL;DR: The different strategies of fork processing elicited by different kinds of replication impairments in prokaryotes are reviewed and the variety of roles played by recombination proteins in these processes are reviewed.
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