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Yeast Carbon Catabolite Repression

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TLDR
It is possible in certain cases to propose a partial model of the way in which the different elements involved in catabolite repression may be integrated, and preliminary evidence suggests that Snf1 is in a dephosphorylated state under these conditions.
Abstract
Glucose and related sugars repress the transcription of genes encoding enzymes required for the utilization of alternative carbon sources; some of these genes are also repressed by other sugars such as galactose, and the process is known as catabolite repression. The different sugars produce signals which modify the conformation of certain proteins that, in turn, directly or through a regulatory cascade affect the expression of the genes subject to catabolite repression. These genes are not all controlled by a single set of regulatory proteins, but there are different circuits of repression for different groups of genes. However, the protein kinase Snf1/Cat1 is shared by the various circuits and is therefore a central element in the regulatory process. Snf1 is not operative in the presence of glucose, and preliminary evidence suggests that Snf1 is in a dephosphorylated state under these conditions. However, the enzymes that phosphorylate and dephosphorylate Snf1 have not been identified, and it is not known how the presence of glucose may affect their activity. What has been established is that Snf1 remains active in mutants lacking either the proteins Grr1/Cat80 or Hxk2 or the Glc7 complex, which functions as a protein phosphatase. One of the main roles of Snf1 is to relieve repression by the Mig1 complex, but it is also required for the operation of transcription factors such as Adr1 and possibly other factors that are still unidentified. Although our knowledge of catabolite repression is still very incomplete, it is possible in certain cases to propose a partial model of the way in which the different elements involved in catabolite repression may be integrated.

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Citations
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Effects of mutation and selection on plasticity of a promoter activity in Saccharomyces cerevisiae.

TL;DR: This study quantified the effects of 235 single-nucleotide mutations in the promoter of a yeast metabolic gene on the activity of this promoter in media containing glucose, galactose, or glycerol as a carbon source and provided insight into the molecular mechanisms underlying gene-by-environment interactions affecting gene expression.
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Oxygen-Dependent Transcriptional Regulator Hap1p Limits Glucose Uptake by Repressing the Expression of the Major Glucose Transporter Gene RAG1 in Kluyveromyces lactis

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Integration of known transcription factor binding site information and gene expression data to advance from co-expression to co-regulation.

TL;DR: This paper proposes to integrate known transcription factor binding site information and gene expression data into a single clustering scheme that will find clusters of co-regulated genes that are not only expressed similarly under the measured conditions, but also share a regulatory structure that may explain their common regulation.
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Protein phosphatases regulate growth, development, cellulases and secondary metabolism in Trichoderma reesei

TL;DR: The results confirmed the central role of catalytic and regulatory subunits of PP2A which regulates several aspects of cell growth and metabolism and showed that the additional homologue of PPH5 in Trichoderma spp.
Book ChapterDOI

Signal Transduction and Morphogenesis in Candida albicans

TL;DR: The major advances in the understanding of the signal transduction pathways that regulate yeast-hypha morphogenesis in this major fungal pathogen of humans are reviewed.
References
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Journal ArticleDOI

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TL;DR: DNA microarrays containing virtually every gene of Saccharomyces cerevisiae were used to carry out a comprehensive investigation of the temporal program of gene expression accompanying the metabolic shift from fermentation to respiration, and the expression patterns of many previously uncharacterized genes provided clues to their possible functions.
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A p300/CBP-associated factor that competes with the adenoviral oncoprotein E1A

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Journal ArticleDOI

The AMP‐Activated Protein Kinase

TL;DR: The central hypothesis is that the AMP-activated protein kinase cascade appears to be an ancient system which evolved to protect cells against the effects of nutritional or environmental stress, and protects the cell by switching off ATP-consuming pathways and switching on alternative pathways for ATP generation.
Journal ArticleDOI

Two differentially regulated mRNAs with different 5′ ends encode secreted and intracellular forms of yeast invertase

TL;DR: A model is proposed to account for the synthesis and regulation of the two forms of inverts: the larger, regulated mRNA contains the initiation codon for the signal sequence required for synthesis of the secreted, glycosylated form of invertase; the smaller, constitutively transcribed mRNA begins within the coding region of the signal sequences, resulting in synthesis ofThe intracellular enzyme.
Journal ArticleDOI

Characterization of the AMP-activated Protein Kinase Kinase from Rat Liver and Identification of Threonine 172 as the Major Site at Which It Phosphorylates AMP-activated Protein Kinase

TL;DR: This finding is consistent with the recent report that the AMP-activated protein kinase kinase can slowly phosphorylate and activate calmodulin-dependentprotein kinase I, at least in vitro.
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