Showing papers on "Fish migration published in 2021"

Prediction of Fish Migration Caused by Ocean Warming Based on SARIMA Model

Abstract: Herring and mackerel are two of the most important pillars of Scottish fisheries. In recent years, global warming has caused a gradual rise in ocean temperatures. In order to survive and reproduce, herring and mackerel populations will migrate. This will have a huge impact on Scotland’s fisheries. Therefore, we need to predict the relocation of fish stocks in advance, make timely adjustments to the fishing range, and minimize the loss of the fishing industry. In this article, we subdivide the research target sea area into 39 regions, establish the optimal SARIMA model for each region based on the collected seawater temperature time series data, and take region 13 and region 15 as examples to fit the ARIMA (3, 3, 1) (1, 2, 1) and ARIMA (2, 3, 1) (0, 2, 1) models with a period of 12. The results show that the SARIMA model fits well in all regions and predicts the temperature changes in the studied sea area from 2021 to 2050. Finally, according to the predicted sea temperature in different periods, the migration position of the fish school is predicted.

Identifying the potential of anadromous salmonid habitat restoration with life cycle models.

Abstract: An investigation into the causes of species decline should include examination of habitats important for multiple life stages. Integrating habitat impacts across life stages with life-cycle models (LCMs) can reveal habitat impairments inhibiting recovery and help guide restoration efforts. As part of the final elements of the Habitat Restoration Planning model (HARP; Beechie et al. this volume), we developed LCMs for four populations of three species of anadromous salmonids (Oncorhynchus kisutch, O. tshawytscha, and O. mykiss), and ran diagnostic scenarios to examine effects of barrier removal, fine sediment reduction, wood augmentation, riparian shade, restoration of the main channel and bank conditions, beaver pond restoration, and floodplain reconnection. In the wood scenario, spawner abundance for all populations increased moderately (29-48%). In the shade scenario, spring-run Chinook salmon abundance increased the most (48%) and fall-run Chinook salmon and steelhead were much less responsive. Coho responded strongly to the beaver pond and floodplain scenarios (76% and 54%, respectively). The fine sediment scenario most benefitted fall- and spring-run Chinook salmon (32-63%), whereas steelhead and coho were less responsive (11-21% increase). More observations are needed to understand high fine sediment and its impacts. Our LCMs were region-specific, identifying places where habitat actions had the highest potential effects. For example, the increase in spring-run Chinook salmon in the wood scenario was driven by the Cascade Mountains Ecological Region. And, although the overall response of coho salmon was small in the barrier removal scenario (6% increase at the scale of the entire basin), barrier removals had important sub-regional impacts. The HARP analysis revealed basin-wide and regional population-specific potential benefits by action types, and this habitat-based approach could be used to develop restoration strategies and guide population rebuilding. An important next step will be to ground-truth our findings with robust empirically-based estimates of life stage-specific survivals and abundances.

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere.

Abstract: Most Atlantic salmon (Salmo salar L.) populations follow an anadromous life cycle, spending early life in freshwater, migrating to the sea for feeding, and returning to rivers to spawn. At the end of the last ice age ~10,000 years ago, several populations of Atlantic salmon became landlocked. Comparing their genomes to their anadromous counterparts can help identify genetic variation related to either freshwater residency or anadromy. The objective of this study was to identify consistently divergent loci between anadromous and landlocked Atlantic salmon strains throughout their geographical distribution, with the long-term aim of identifying traits relevant for salmon aquaculture, including fresh and seawater growth, omega-3 metabolism, smoltification, and disease resistance. We used a Pool-seq approach (n = 10-40 individuals per population) to sequence the genomes of twelve anadromous and six landlocked Atlantic salmon populations covering a large part of the Northern Hemisphere and conducted a genomewide association study to identify genomic regions having been under different selection pressure in landlocked and anadromous strains. A total of 28 genomic regions were identified and included cadm1 on Chr 13 and ppargc1a on Chr 18. Seven of the regions additionally displayed consistently reduced heterozygosity in fish obtained from landlocked populations, including the genes gpr132, cdca4, and sertad2 on Chr 15. We also found 16 regions, including igf1 on Chr 17, which consistently display reduced heterozygosity in the anadromous populations compared to the freshwater populations, indicating relaxed selection on traits associated with anadromy in landlocked salmon. In conclusion, we have identified 37 regions which may harbor genetic variation relevant for improving fish welfare and quality in the salmon farming industry and for understanding life-history traits in fish.

Striped bass (Morone saxatilis) migration timing driven by estuary outflow and sea surface temperature in the San Francisco Bay-Delta, California

Abstract: The influence of climate on the timing of large-scale animal migrations is a major ecological and resource management concern. Anadromous fish migrations can have broad scale impacts on human communities and marine, aquatic and terrestrial food webs. However, isolating the effects of climate change on the timing of life stage transitions for anadromous fish species is challenging. Striped bass (Morone saxatilis) exhibit striking variation in migration patterns within their natural range, including migratory behaviors that change with latitude, and climate-induced temperature changes are predicted to drive future habitat and distribution changes. Here we explore the linkages between migration and multiple components of coastal and inland aquatic ecosystems impacted by climate change. By leveraging environmental and fisheries monitoring which began in 1969, we describe the upstream migration timing of non-native adult Striped bass influenced by estuary outflow and sea surface temperature in the San Francisco Bay-Delta, California. Striped bass migrated later in years when Delta outflow was greater and sea surface temperature was cooler. It is likely that temperature thresholds in the ocean during the springtime provide a cue for Striped bass to initiate migration, but sea surface temperature may also represent composite climatic trends influencing Striped bass. Further, the observed variation in migration timing of adult Striped bass has implications for predation risk on the seaward-migration of juvenile Chinook salmon.

Marine and freshwater regime changes impact a community of migratory Pacific salmonids in decline.

Abstract: Marine and freshwater ecosystems are increasingly at risk of large and cascading changes from multiple human activities (termed "regime shifts"), which can impact population productivity, resilience, and ecosystem structure. Pacific salmon exhibit persistent and large fluctuations in their population dynamics driven by combinations of intrinsic (e.g., density dependence) and extrinsic factors (e.g., ecosystem changes, species interactions). In recent years, many Pacific salmon have declined due to regime shifts but clear understanding of the processes driving these changes remains elusive. Here, we unpacked the role of density dependence, ecosystem trends, and stochasticity on productivity regimes for a community of five anadromous Pacific salmonids (Steelhead, Coho Salmon, Pink Salmon, Dolly Varden, and Coastal Cutthroat Trout) across a rich 40-year time-series. We used a Bayesian multivariate state-space model to examine whether productivity shifts had similarly occurred across the community and explored marine or freshwater changes associated with those shifts. Overall, we identified three productivity regimes: an early regime (1976-1990), a compensatory regime (1991-2009), and a declining regime (since 2010) where large declines were observed for Steelhead, Dolly Varden, and Cutthroat Trout, intermediate declines in Coho and no change in Pink Salmon. These regime changes were associated with multiple cumulative effects across the salmon life cycle. For example, increased seal densities and ocean competition were associated with lower adult marine survival in Steelhead. Watershed logging also intensified over the past 40 years and was associated with (all else equal) ≥97% declines in freshwater productivity for Steelhead, Cutthroat, and Coho. For Steelhead, marine and freshwater dynamics played approximately equal roles in explaining trends in total productivity. Collectively, these changing environments limited juvenile production and lowered future adult returns. These results reveal how changes in freshwater and marine environments can jointly shape population dynamics among ecological communities, like Pacific salmon, with cascading consequences to their resilience.

“The giants’ feast”: predation of the large introduced European catfish on spawning migrating allis shads

Abstract: European catfish Silurus glanis is a large non-native opportunistic predator able to develop hunting strategy in response to newly available prey where it has been introduced. Migrating spawning anadromous prey such as allis shad Alosa alosa could represent this available and energy-rich food resource. Here, we report an impressive catfish hunting behavior on shad spawning act in one of the main spawning grounds in Europe (Garonne River, Southwest France). Shad spawning act consists of at least one male and one female swimming side by side, trashing the water surface with their tail which, therefore, produces a splashing noise audible from the river bank. The catfish hunting behavior on shad spawning act was studied, at night, during spring months, using both auditory and video survey. Simultaneously, catfish individuals were fishing to analyze their stomach content. Catfish disturbed 12% of the 1024 nocturnal spawning acts we heard, and this proportion increased to 37% among the 129 spawning acts when estimated with low-light camera recording. Stomach content analyses on 251 large catfish individuals (body length > 128 cm) caught in the same river stretch revealed shad represented 88.5% of identified prey items in catfish diet. This work demonstrates that European catfish predation must be considered as a significant factor of mortality of allis shad. In a context of the extension of the European catfish range area in western and southern European freshwaters, this new trophic impact, with other ones previously described for salmon or lamprey, has to be considered in European conservation plans of anadromous species.

Tide gates form physical and ecological obstacles to river herring (Alosa spp.) spawning migrations

Abstract: River herring (Alosa spp.) are anadromous fish that enter North American Atlantic coastal rivers and lakes each spring to spawn. Anthropogenic structures such as dams and tide gates serve as physic...

The effects of nutritional state, sex and body size on the marine migration behaviour of sea trout

Abstract: The sea trout (anadromous brown trout Salmo trutta) displays extensive among-individual variation in marine migration behaviour. We studied the migration behaviour of 286 sea trout (27-89 cm) tagged with acoustic transmitters in the spring, in 7 populations located in 2 distinct marine fjord systems in Norway. We examined whether individual nutritional state, sex and body size influenced marine migration behaviour in terms of (1) the decision to migrate to the sea or remain resident in freshwater and/or estuarine habitats, (2) seasonal timing of sea entry, (3) duration of the marine residency and (4) migration distance at sea from the home river. Most sea trout were in a poor nutritional state in the spring prior to migration. Sea trout with low body condition factors and low plasma triglyceride levels were more likely to migrate to sea, and low triglyceride levels were also associated with earlier sea entry. Poor body condition also increased the probability of individuals remaining at sea longer and migrating further offshore compared to fish in better condition. Females were more likely to migrate to the sea than males. Larger fish were also more likely to migrate to the sea instead of remaining in freshwater and estuaries, and dispersed over greater distances from the river than smaller fish. In conclusion, this study documented general trends across multiple populations and showed that nutritional state, sex and body size influence important aspects of the marine migration behaviour of sea trout.

Pre-reproductive movements of potamodromous cyprinids in the Iberian Peninsula: when environmental variability meets semipermeable barriers

Abstract: This study aims to describe pre-reproductive movements of Luciobarbus bocagei and Pseudochondrostoma duriense in a regulated canyon-stretch of the Tormes River (Spain), with high environmental variability, semipermeable barriers, and fishway retrofitting actions. The main objectives were to identify peak migration dates and environmental drivers, test ensemble-learning techniques to model fish migration and propose adaptive management measures. To achieve this, fish movements were 5-year monitored in a stepped fishway and Survival Analysis and Random Forest techniques were used for data analysis and modelling. Results showed that migration occurred in May–July, a wider period than the one previously reported in the literature. Movements were triggered by the increase in water temperature and photoperiod, and were strongly affected by the hydraulic river scenario (water levels and discharge) at the semipermeable barriers. Random Forest was able to include the effect of each barrier and predict accurately timing and number of migrants, classifying and ranking the importance of variables. Moreover, developed models allowed to assess fishway retrofitting actions and to predict positive effects in fish number under new, scheduled and variable environmental flow scenarios. Long-term monitoring together with ensemble-learning methods can allow the definition of cost-effective adaptive management strategies to ensure endemic fish conservation.

Wind energy's bycatch: Offshore wind deployment impacts on hydropower operation and migratory fish

Abstract: Hydropower plays a key role in maintaining grid reliability, but there is uncertainty regarding the ecological implications of using hydropower to balance variability from high penetration of intermittent renewable resources, such as solar and wind. Hydropower can offer advantages at the macro-ecological level (e.g., reduced greenhouse gas emissions), however it may have significant environmental impact on a local level (e.g., increased risk to fish species during migration and breeding periods). Using the New England region as a case study, we use an electricity model to estimate how hydropower operation changes as offshore wind capacity increases at a system level. We then tie alterations in hydropower energy production to local impacts on riverine ecosystems and the lifecycle of migratory fish. We find that increasing offshore wind capacity from 1600 to 10,000 MW more than doubles the average hourly hydropower ramping need and the associated river flowrate during April. This increased flowrate aligns with the migration timing of the lone endangered fish species on the Connecticut River, the shortnose sturgeon. Alternatively, the majority of months in which hydropower operation is most strongly impacted by the addition of offshore wind capacity do not coincide with key fish lifecycle events. Other sustainability benefits, including reduced air pollution and water consumption, can be achieved through deployments of offshore wind. Our results suggest that in order to balance global (i.e., CO2 mitigation) and local (i.e., fish migration) environmental issues, a portfolio of solutions is needed to address grid integration of renewables.

Cumulative impacts of habitat fragmentation and the environmental factors affecting upstream migration in the threatened sea lamprey, Petromyzon marinus

Abstract: River ecosystems are often fragmented by artificial structures, such as weirs. For anadromous species, these structures can impede access to upstream spawning sites and ultimately lead to severe population declines. This study focused on the freshwater spawning migration of the sea lamprey, Petromyzon marinus, an anadromous species threatened by habitat fragmentation across its native range. To quantify the cumulative impacts of multiple weirs on upstream-migrating adults, and to explore the environmental factors affecting migratory movements, passive acoustic telemetry was applied to 56 individuals during their spawning migration in the heavily fragmented River Severn basin, UK. While 89% of tagged sea lamprey passed the first weir upstream of the release site on the main river, only 4% passed the fifth weir. For 85% of migrants, the upstream extent of migration was immediately downstream of a weir. Individuals that passed weirs upstream of the release site (n = 50) took 21.6 ± 2.8 days to reach their most upstream location, experiencing cumulative passage times at weirs of 15.7 ± 2.8 days; these delays constituted a median of 84% of total upstream movement times. Multistate models showed that the weir passage rates of sea lamprey in tidal and non-tidal areas increased significantly when downstream river level and discharge were elevated. Upstream-to-downstream changes in direction were frequent downstream of weirs, but rare in unobstructed river sections. The results provided evidence for a cumulative effect of multiple weirs on sea lamprey movements, substantially delaying upstream migrants and limiting their spawning to atypical habitat. The results also demonstrated the crucial roles of high tides and elevated discharge events in enabling weir passage. Although the Severn Estuary features conservation designations for sea lamprey, this study reveals that barriers are inhibiting their upstream migration, a problem that should be addressed to assist sea lamprey conservation.

Natal origin and migration pathways of Mekong catfish (Pangasius krempfi) using strontium isotopes and trace element concentrations in environmental water and otoliths.

Abstract: To improve our knowledge of the migration pathway of a highly threatened fish species along the Mekong River, strontium isotope ratios (87Sr/86Sr) and 18 trace element concentrations were measured in the water and in the otoliths of an anadromous catfish, Pangasius krempfi, to infer its natal origin and potential migration pathways. Water was sampled at 18 locations along the mainstream, tributaries and distributaries of the Mekong River. To check for accuracy and precision, measurements of the 87Sr/86Sr ratios and trace element concentrations were then compared in two laboratories that use different analytical methods. Differences in trace element concentrations between locations were not significant and could not, therefore, be used to discriminate between migration pathways. However, the Mekong mainstream, tributaries and distributaries could all be discriminated using Sr isotopes. The 87Sr/86Sr profiles recorded in P. krempfi otoliths showed that there were three contingents with obligate freshwater hatching and variable spawning sites along the Mekong mainstream, from Phnom Penh (Cambodia) to Nong Khai (Thailand) or further. After hatching, the fish migrated more or less rapidly to the Mekong Delta and then settled for most of their lifetime in brackish water. Spawning habitats and migration routes may be threatened by habitat shifts and the increasing number of hydropower dams along the river, especially the contingents born above Khone Falls (Laos). The conservation of P. krempfi, as well as other migratory fish in the Mekong River, requires agreements, common actions and management by all countries along the Mekong River. This study highlighted the importance of using both Sr/Ca and 87Sr/86Sr ratios to understand life history of anadromous fishes as the 87Sr/86Sr ratio in the water was shown to be less effective than the Sr/Ca ratio in identifying movements between different saline areas.

Coldwater fish in a warm water world: Implications for predation of salmon smolts during estuary transit.

Abstract: Predator-prey systems face intensifying pressure from human exploitation and a warming climate with implications for where and how natural resource management can successfully intervene. We hypothesized young salmon migrating to the Pacific Ocean face a seasonally intensifying predator gauntlet when warming water temperature intensifies a multiple predator effect (MPE) from Striped Bass Morone saxatilis and Largemouth Bass Micropterus salmoides. We evaluated this hypothesis using data synthesis and simulation modeling.Contemporary studies based on acoustically tagged fish reaffirmed older observations that Chinook Salmon smolts must transit the Delta before water temperature reaches 20°C or mortality will be nearly 100%. Striped Bass attack rates on tethered smolts were insensitive to distance from shore and water temperature, whereas Largemouth Bass attack rates were highest near shorelines in warm water, supporting the temporal aspect of the hypothesis. Whether the combined effects of the two predators produce an MPE remains unconfirmed due to limitations on quantifying salmon behavior.We used multiple simulation models to try to reconstruct the empirical relationship between smolt survival and water temperature. Simulations reinforced attack rate results, but could not recreate the temperature dependence in smolt survival except at higher than observed temperatures. We propose three hypotheses for why and recommend discerning among them should be a focus of research.We found significant linear relationships between monthly mean inflow to the Delta from each of its two largest tributaries and monthly mean water temperatures along associated salmon migration routes, but these relationships can be nonlinear, with most of the correlation occurring at low inflows when water temperature is largely controlled by air temperature and day length. As the global climate warms, changed circumstances in predator-prey relationships may present important challenges when managing species vulnerable to extinction in addition to presently more abundant species.

Environmental DNA reveals the temporal and spatial extent of spawning migrations of European shad in a highly fragmented river basin

Abstract: 1. Anthropogenic barriers on lowland rivers impede the spawning migrations of anadromous fishes, preventing access to historical spawning areas. In the cryptic European shads Alosa alosa and Alosa fallax (‘shad’ hereafter), this has resulted in population declines across their range. Conservation programmes aim to facilitate the passage of migrators over these barriers and so require baseline knowledge on spatial and temporal extent of current migrations. 2. Here, a shad-specific environmental DNA (eDNA) assay was used to quantify the spatial extent of shad spawning migrations in the River Severn basin, Western England. This basin is characterised by the presence of multiple anthropogenic barriers in the lower catchment. In 2017, the eDNA assay was piloted in the River Teme, an important shad spawning tributary, and then applied in 2018 and 2019 across the lower Severn basin. 3. In all years, shad DNA was detected between mid-May and mid-June, with the maximum spatial extent of shad distribution being in early June when shad eDNA was detected upstream of weirs that were generally considered as impassable. In 2018, this included the detection of shad above the most upstream weir on the main River Severn that required individual fish to have passed six weirs. 4. Although anthropogenic barriers inhibit the spawning migrations of shad, this eDNA assay revealed some highly vagile individuals might be able to ascend these barriers and migrate considerable distances upstream. This suggests that efforts to increase the permeability of these barriers could result in relatively high numbers of migrating shad reaching upstream spawning areas. These results demonstrate that this eDNA assay could be also utilised across their range, outside the study system, to further quantify the spatial extent of their spawning, including in highly fragmented rivers and those where shad are believed to only spawn occasionally and are rarely observed.

Effects of run-of-river hydropower plants on fish communities in montane stream ecosystems in Serbia

Abstract: Small run‐of‐river hydropower plants (RRHPs) have revealed strong harmful effects worldwide on stream habitats (e.g., fragmentation and destruction) and decreased fish species, especially anadromous species abundance. Recently, RRHPs have rapidly been installed in Serbia. Most were installed on montane streams because their steep slopes are most convenient for hydropower energy production at minimal costs. Brown trout Salmo trutta are prominent in the fish communities of this rarest type of aquatic ecosystems. Their native molecular diversity reflects a biodiversity hotspot in the Balkans, and they provide attractive fishing opportunities. Records from fishery management plans for highland stream fisheries where RRHPs were installed revealed reduced brown trout biomass compared with streams without RRHPs. Research on six streams with operational RRHPs revealed severe deterioration of habitat, for example, increased water temperature, reduced dissolved oxygen, and increased nutrient contents. Effects on fish communities were evident from a change in their structure. Resident, stream‐dwelling brown trout were the most affected species with steep declines in abundance, biomass, and productivity. Fragmentation owing to damming was also reflected by deterioration of their age structure. Unique native brown trout stocks susceptible to adverse effects are difficult to restore by stocking, and fish passages commonly supplied as compensation to overcome the disruption of habitats cannot mitigate the threat posed to the fish.

Stock composition of Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) encountered in marine and estuarine environments on the U.S. Atlantic Coast

Abstract: Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) is a large, anadromous fish native to the Atlantic Coast of North America. Although this species once supported important fisheries, centuries of exploitation and habitat degradation have resulted in dramatic declines, presumed extirpation in some rivers, and ultimately listing under the U.S. Endangered Species Act (ESA). Under the ESA, Atlantic sturgeon are listed as five separate Distinct Population Segments (DPSs), which form the basis for federal management. Despite state and federal protections Atlantic sturgeon still face significant threats to their recovery, including fisheries bycatch mortality, marine construction, dredging, dams, and vessel strikes. However, because subadult and adult Atlantic sturgeon migrate extensively across estuarine and marine environments and frequently form mixed-stock aggregations in non-natal habitats, it can be difficult to determine how these threats impact specific populations and DPSs. To better understand ontogenetic shifts in habitat use and stock-specific exposure to anthropogenic threats, we performed a mixed-stock analysis of 1704 Atlantic sturgeon encountered across the U.S. Atlantic Coast. Collections made north of Cape Cod, MA and south of Cape Hatteras, NC were dominated by individuals from regional stocks; however, we found extensive stock mixing in the mid-Atlantic region, particularly in coastal environments where individuals from all five DPSs were commonly observed. Subadults and adults that were encountered in offshore environments had moved, on average, 277 km from their natal source; however, 23% were sampled over 500 km from their natal river suggesting long-distance movements are relatively common in these age classes. Overall, our work highlights that Atlantic sturgeon populations are vulnerable to threats over vast areas and emphasizes the need for continued genetic monitoring to track recovery progress.

Integration of Constructed Floodplain Ponds into Nature-Like Fish Passes Supports Fish Diversity in a Heavily Modified Water Body

Abstract: Fish passes facilitate fish movement in fragmented river systems, yet they can also provide important habitat functions. This study investigated the fish community composition of different constructed habitat types (fluvial habitats, floodplain ponds) within fish passes in relation to habitat characteristics in order to deduce recommendations for fish-friendly designs of such structures. Fish community structures within passes differed significantly from those in the main river, comprising a high number of rheophilic species in fluvial habitats (Thymallus thymallus, Hucho hucho, Salmo trutta, Cottus gobio, Chondrostoma nasus, and Barbus barbus), and of stagnophilic species in floodplain ponds (Rhodeus amarus, Scardinius erythrophthalmus, Misgurnus bipartitus, and Tinca tinca). During summer, floodplain ponds also provided important juvenile habitats for the target species C. nasus and B. barbus. Differences between the two habitat types in fish abundance were mostly explained by differences in macrophyte coverage, gravel, boulders, temperature, and current speed. The findings of this study stress the important habitat functions of fish passes. They also suggest that integration of diverse habitat structures, especially of currently hardly considered constructed floodplain ponds into fish passes, can greatly enhance their fish communities and contribute to the restoration of several declining target species of conservation.

Long-term effects and cost-benefit analysis of eight spawning gravel augmentations for Atlantic salmon and Brown trout in Norway

Abstract: River regulation alters flow and sediment regime, habitat availability, and ultimately the ecological functioning of rivers. Various restoration and mitigation measures have been developed to improve ecological function, and among them is the addition of gravel to enhance the reproduction of gravel bed spawning fishes. However, information on long-term efficiency, costs, and maintenance needs of gravel additions are scarce. Here, we study the functioning of gravel additions at eight sites in three rivers in western Norway for up to 18 years. Gravel was added between 2002 and 2010 to enhance spawning of Atlantic salmon and anadromous Brown trout. We monitored changes in the size of the gravel-covered areas, sediment composition, interstitial oxygen, egg survival, and juvenile fish densities. Additionally, we report monetary costs, identify potential maintenance needs, and calculate a cost-benefit ratio. Juvenile densities of Atlantic salmon and Brown trout increased significantly after the gravel augmentations. After 10–18 years, the median egg survival was still high (> 90%) and sediment conditions were still suitable for salmonid fish reproduction. The areas were, however, shrinking across time (median area reduction 26%), mostly caused by scouring of gravel in the steep, supply-limited, and partly regulated rivers. The average construction costs of spawning gravel augmentations were 11.2 NOK (1.12 €) m−2 year−1. Compared to similar measures elsewhere, the measures have had a long life span (up to 18 years) at relatively low costs. Gravel augmentation was concluded to be a successful management measure that contributed to significantly increased Atlantic salmon and Brown trout reproduction.

Transposable Elements and Teleost Migratory Behaviour.

Abstract: Transposable elements (TEs) represent a considerable fraction of eukaryotic genomes, thereby contributing to genome size, chromosomal rearrangements, and to the generation of new coding genes or regulatory elements. An increasing number of works have reported a link between the genomic abundance of TEs and the adaptation to specific environmental conditions. Diadromy represents a fascinating feature of fish, protagonists of migratory routes between marine and freshwater for reproduction. In this work, we investigated the genomes of 24 fish species, including 15 teleosts with a migratory behaviour. The expected higher relative abundance of DNA transposons in ray-finned fish compared with the other fish groups was not confirmed by the analysis of the dataset considered. The relative contribution of different TE types in migratory ray-finned species did not show clear differences between oceanodromous and potamodromous fish. On the contrary, a remarkable relationship between migratory behaviour and the quantitative difference reported for short interspersed nuclear (retro)elements (SINEs) emerged from the comparison between anadromous and catadromous species, independently from their phylogenetic position. This aspect is likely due to the substantial environmental changes faced by diadromous species during their migratory routes.

Carcass Additions Influence Food Webs Through Bottom-Up and Direct Consumption Pathways Along a Fish Species Assemblage Gradient

Abstract: The loss of subsidies delivered by anadromous fish to inland stream ecosystems may have profound influences on stream food webs. However, studies have focused on food web responses in ecosystems where the fish assemblage is dominated by salmonids. We evaluated food web responses to carcass additions in three locations of an interior Columbia River Basin stream with varying native fish assemblages. Periphyton biomass responses were mixed with increases in treatment compared to control reaches of the middle and downstream pairs, but not in the upstream pair where scavenging by bears removed the majority of carcasses. Stable isotope analysis revealed marine-derived nutrient (MDN) enrichment of periphyton and invertebrate functional feeding groups in the middle and downstream pairs (up to 12% MDN derived), but not in the upstream pair. Non-salmonid fish exhibited limited MDN assimilation (~ 5 and 10% MDN derived), with isotopic enrichment patterns similar to lower trophic levels and little evidence of eggs and carcass material consumption, suggesting bottom-up transfer of MDN to non-salmonid fishes. In contrast, across the three study pairs, juvenile Chinook Salmon (Oncorhynchus tshawytscha) and steelhead trout (O. mykiss) assimilated MDN rapidly, obtaining up to 25% and 57% of their nitrogen from carcasses, respectively. Diet analysis and isotopic enrichment patterns indicated that juvenile salmonid assimilation occurred primarily through direct consumption of eggs and carcass tissue. Our findings suggest that salmonids in this region may experience more benefit from carcass additions containing eggs, while non-salmonids are likely to experience minimal MDN incorporation whether or not eggs are present.