E
Eoin L. Brodie
Researcher at Lawrence Berkeley National Laboratory
Publications - 227
Citations - 33887
Eoin L. Brodie is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Ecosystem & Soil water. The author has an hindex of 66, co-authored 207 publications receiving 28446 citations. Previous affiliations of Eoin L. Brodie include University College Dublin & University of California.
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Journal ArticleDOI
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Todd Z. DeSantis,Philip Hugenholtz,Neils Larsen,Mark Rojas,Eoin L. Brodie,Keith Keller,Thomas Huber,Daniel Dalevi,Ping Hu,Gary L. Andersen +9 more
TL;DR: A 16S rRNA gene database (http://greengenes.lbl.gov) was used to provide chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies as mentioned in this paper.
Journal ArticleDOI
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivaylo I. Ivanov,Koji Atarashi,Nicolas Manel,Eoin L. Brodie,Tatsuichiro Shima,Ulas Karaoz,Dongguang Wei,Katherine C. Goldfarb,Clark A. Santee,Susan V. Lynch,Takeshi Tanoue,Akemi Imaoka,Kikuji Itoh,Kiyoshi Takeda,Yoshinori Umesaki,Kenya Honda,Dan R. Littman +16 more
TL;DR: The authors showed that colonisation of mice with a segmented filamentous bacterium (SFB) is sufficient to induce the appearance of CD4+ T helper cells that produce IL-17 and IL-22 (Th17 cells) in the lamina propria.
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NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
Todd Z. DeSantis,Philip Hugenholtz,Keith Keller,Eoin L. Brodie,Niels Larsen,Yvette M. Piceno,Richard Phan,Gary L. Andersen +7 more
TL;DR: An online tool could be developed to efficiently align thousands of 16S rRNA genes via the NAST algorithm for creating multiple sequence alignments (MSA) and distance matrices can be calculated for diversity estimates and organisms can be classified by taxonomy.
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.
Kateryna Zhalnina,Katherine B. Louie,Zhao Hao,Nasim Mansoori,Ulisses Nunes da Rocha,Ulisses Nunes da Rocha,Shengjing Shi,Heejung Cho,Heejung Cho,Ulas Karaoz,Dominique Loqué,Benjamin P. Bowen,Mary K. Firestone,Mary K. Firestone,Trent R. Northen,Eoin L. Brodie,Eoin L. Brodie +16 more
TL;DR: It is shown that pre-programmed developmental processes in plants result in consistent patterns in the chemical composition of root exudates, which provides a mechanistic underpinning for the process of rhizosphere microbial community assembly and provides an attractive direction for the manipulation of the Rhizosphere microbiome for beneficial outcomes.
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Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Karthik Anantharaman,Christopher T. Brown,Laura A. Hug,Itai Sharon,Cindy J. Castelle,Alexander J. Probst,Brian C. Thomas,Andrea Singh,Michael J. Wilkins,Ulas Karaoz,Eoin L. Brodie,Kenneth H. Williams,Susan S. Hubbard,Jillian F. Banfield,Jillian F. Banfield +14 more
TL;DR: Terabase-scale cultivation-independent metagenomics is applied to aquifer sediments and groundwater and 2,540 draft-quality, near-complete and complete strain-resolved genomes are reconstructed, finding that few organisms within the community can conduct multiple sequential redox transformations.