J
Jennifer L. Jacobi
Researcher at National Center for Genome Resources
Publications - 8
Citations - 1464
Jennifer L. Jacobi is an academic researcher from National Center for Genome Resources. The author has contributed to research in topics: Comparative genomics & Genome. The author has an hindex of 5, co-authored 8 publications receiving 1077 citations.
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Journal ArticleDOI
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling,Patrick J. Keeling,Fabien Burki,Heather M. Wilcox,Bassem Allam,Eric E. Allen,Linda A. Amaral-Zettler,Linda A. Amaral-Zettler,E. Virginia Armbrust,John M. Archibald,John M. Archibald,Arvind K. Bharti,Callum J. Bell,Bank Beszteri,Kay D. Bidle,Connor Cameron,Lisa Campbell,David A. Caron,Rose Ann Cattolico,Jackie L. Collier,Kathryn J. Coyne,Simon K. Davy,Phillipe Deschamps,Sonya T. Dyhrman,Bente Edvardsen,Ruth D. Gates,Christopher J. Gobler,Spencer J. Greenwood,Stephanie Guida,Jennifer L. Jacobi,Kjetill S. Jakobsen,Erick R. James,Bethany D. Jenkins,Uwe John,Matthew D. Johnson,Andrew R. Juhl,Anja Kamp,Anja Kamp,Laura A. Katz,Ronald P. Kiene,Alexander Kudryavtsev,Alexander Kudryavtsev,Brian S. Leander,Senjie Lin,Connie Lovejoy,Denis H. Lynn,Denis H. Lynn,Adrian Marchetti,George B. McManus,Aurora M. Nedelcu,Susanne Menden-Deuer,Cristina Miceli,Thomas Mock,Marina Montresor,Mary Ann Moran,Shauna A. Murray,Govind Nadathur,Satoshi Nagai,Peter B. Ngam,Brian Palenik,Jan Pawlowski,Giulio Petroni,Gwenael Piganeau,Matthew C. Posewitz,Karin Rengefors,Giovanna Romano,Mary E. Rumpho,Tatiana A. Rynearson,Kelly B. Schilling,Declan C. Schroeder,Alastair G. B. Simpson,Alastair G. B. Simpson,Claudio H. Slamovits,Claudio H. Slamovits,David Roy Smith,G. Jason Smith,Sarah R. Smith,Heidi M. Sosik,Peter Stief,Edward C. Theriot,Scott N. Twary,Pooja E. Umale,Daniel Vaulot,Boris Wawrik,Glen L. Wheeler,William H. Wilson,Yan Xu,Adriana Zingone,Alexandra Z. Worden,Alexandra Z. Worden +89 more
TL;DR: In this paper, the authors describe a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans and their biology, evolution, and ecology.
Journal ArticleDOI
A survey of the sorghum transcriptome using single-molecule long reads
Salah E. Abdel-Ghany,Michael Hamilton,Jennifer L. Jacobi,Peter B. Ngam,Nicholas P. Devitt,Faye D. Schilkey,Asa Ben-Hur,Anireddy S. N. Reddy +7 more
TL;DR: This analysis reveals transcriptome-wide full-length isoforms at an unprecedented scale with over 11,000 novel splice isoforms and uncovers APA of ∼11,000 expressed genes and more than 2,100 novel genes.
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Patrick J. Keeling,Fabien Burki,Heather M. Wilcox,Bassem Allam,Eric E. Allen,Linda A. Amaral-Zettler,E. V. Armbrust,John M. Archibald,Arvind K. Bharti,Callum J. Bell,Bank Beszteri,Kay D. Bidle,Connor Cameron,Lisa Campbell,David A. Caron,Rose Ann Cattolico,Jackie L. Collier,Kathryn J. Coyne,Simon K. Davy,P Deschamps,Sonya T. Dyhrman,Bente Edvardsen,Ruth D. Gates,Christopher J. Gobler,Spencer J. Greenwood,Stephanie Guida,Jennifer L. Jacobi,Kjetill S. Jakobsen,Erick R. James,Bethany D. Jenkins,Uwe John,Matthew D. Johnson,Andrew R. Juhl,Anja Kamp,Laura A. Katz,Ronald P. Kiene,Alexander Kudryavtsev,Brian S. Leander,Senjie Lin,Connie Lovejoy,Denis H. Lynn,Adrian Marchetti,George B. McManus,Aurora M. Nedelcu,Susanne Menden-Deuer,Cristina Miceli,Thomas Mock,Marina Montresor,Mary Ann Moran,Shauna A. Murray,G Nadathur,Satoshi Nagai,Peter B. Ngam,Brian Palenik,Jan Pawlowski,Giulio Petroni,Gwenael Piganeau,Matthew C. Posewitz,Karin Rengefors,Giovanna Romano,Mary E. Rumpho,Tatiana A. Rynearson,K. B. Schilling,Declan C. Schroeder,Alastair G. B. Simpson,Claudio H. Slamovits,David Roy Smith,G. J. Smith,Sarah R. Smith,Heidi M. Sosik,Peter Stief,Edward C. Theriot,Scott N. Twary,Pooja E. Umale,Daniel Vaulot,Boris Wawrik,Glen L. Wheeler,William H. Wilson,Y Xu,Adriana Zingone,Alexandra Z. Worden +80 more
TL;DR: This Community Page describes a resource of 700 transcriptomes from marine microbial eukaryotes to help understand their role in the world's oceans.
Journal ArticleDOI
Unique Molecular Identifiers reveal a novel sequencing artefact with implications for RNA-Seq based gene expression analysis
Johnny Sena,Giulia Galotto,Nico P. Devitt,Melanie C. Connick,Jennifer L. Jacobi,Pooja E. Umale,Luis Vidali,Callum J. Bell +7 more
TL;DR: It is shown that the common assumption that sequence reads having different mapping coordinates are derived from different starting molecules does not hold, and is likely to result in over-estimation of certain transcript abundances, depending on the counting method employed.
Journal ArticleDOI
A whole genome assembly of the horn fly, Haematobia irritans, and prediction of genes with roles in metabolism and sex determination.
Kranti Konganti,Felix D. Guerrero,Faye D. Schilkey,Peter B. Ngam,Jennifer L. Jacobi,Pooja E. Umale,Adalberto A. Pérez de León,David W. Threadgill +7 more
TL;DR: Comparative genomics analysis with the Dipteran flies Musca domestica L., Drosophila melanogaster, and Lucilia cuprina, show that the horn fly is most closely related to M. domestica, and 276 genomic loci encoding members of metabolic enzyme gene families such as cytochrome P450s, esterases and glutathione S-transferases are identified.