J
Jeremy Peterson
Researcher at J. Craig Venter Institute
Publications - 35
Citations - 37923
Jeremy Peterson is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 34, co-authored 35 publications receiving 36303 citations. Previous affiliations of Jeremy Peterson include TigerLogic.
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Journal ArticleDOI
Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains
Robert D. Fleischmann,David Alland,Jonathan A. Eisen,L. Carpenter,Owen White,Jeremy Peterson,Robert T. DeBoy,Robert J. Dodson,Michelle L. Gwinn,Daniel H. Haft,Erin Hickey,James F. Kolonay,William C. Nelson,Lowell Umayam,Maria D. Ermolaeva,Steven L. Salzberg,Arthur L. Delcher,T. Utterback,Janice Weidman,Hoda Khouri,John Gill,A. Mikula,William R. Bishai,William R. Jacobs,J. C. Venter,Claire M. Fraser +25 more
TL;DR: Results demonstrate that polymorphisms among M. tuberculosis strains are more extensive than initially anticipated, and genetic variation may have an important role in disease pathogenesis and immunity.
Journal ArticleDOI
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
Jane M. Carlton,Samuel V. Angiuoli,Bernard B. Suh,Taco W. A. Kooij,Mihaela Pertea,Joana C. Silva,Maria D. Ermolaeva,Jonathan E. Allen,Jeremy D. Selengut,Hean L. Koo,Jeremy Peterson,Mihai Pop,Daniel S. Kosack,Martin Shumway,Shelby L. Bidwell,Shamira J. Shallom,Susan Van Aken,Steven B. Riedmuller,Tamara Feldblyum,Jennifer Cho,John Quackenbush,Martha Sedegah,Azadeh Shoaibi,Leda M. Cummings,Laurence Florens,John R. Yates,J. Dale Raine,Robert E. Sinden,Michael Harris,Deirdre A. Cunningham,Peter R. Preiser,Lawrence W. Bergman,Akhil B. Vaidya,Leo H.M. van Lin,Chris J. Janse,Andrew P. Waters,Hamilton O. Smith,Owen White,Steven L. Salzberg,J. Craig Venter,Claire M. Fraser,Stephen L. Hoffman,Malcolm J. Gardner,Daniel J. Carucci +43 more
TL;DR: This is the first genome sequence of a model eukaryotic parasite, and it provides insight into the use of such systems in the modelling of Plasmodium biology and disease.
Journal ArticleDOI
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
John F. Heidelberg,Rekha Seshadri,Shelley A. Haveman,Christopher L. Hemme,Ian T. Paulsen,James F. Kolonay,Jonathan A. Eisen,Naomi L. Ward,Barbara A. Methé,Lauren M. Brinkac,Sean C. Daugherty,Robert T. DeBoy,Robert J. Dodson,A. Scott Durkin,Ramana Madupu,William C. Nelson,Steven A. Sullivan,Derrick E. Fouts,Daniel H. Haft,Jeremy D. Selengut,Jeremy Peterson,Tanja M. Davidsen,Nikhat Zafar,Liwei Zhou,Diana Radune,George Dimitrov,Mark Hance,Kevin Tran,Hoda Khouri,John Gill,T. Utterback,Tamara Feldblyum,Judy D. Wall,Gerrit Voordouw,Claire M. Fraser +34 more
TL;DR: The relative arrangement of genes encoding enzymes for energy transduction, together with inferred cellular location of the enzymes, provides a basis for proposing an expansion to the 'hydrogen-cycling' model for increasing energy efficiency in this bacterium.
Journal ArticleDOI
Whole genome comparisons of serotype 4b and 1/2a strains of the food‐borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
Karen E. Nelson,Derrick E. Fouts,Emmanuel F. Mongodin,Jacques Ravel,Robert T. DeBoy,James F. Kolonay,David A. Rasko,Samuel V. Angiuoli,Steven R. Gill,Ian T. Paulsen,Jeremy Peterson,Owen White,William C. Nelson,William C. Nierman,Maureen J. Beanan,Lauren M. Brinkac,Sean C. Daugherty,Robert J. Dodson,A. Scott Durkin,Ramana Madupu,Daniel H. Haft,Jeremy D. Selengut,Susan Van Aken,Hoda Khouri,Nadia Fedorova,Heather Forberger,Bao Tran,Sophia Kathariou,Laura D. Wonderling,Gaylen A. Uhlich,Darrell O. Bayles,John B. Luchansky,Claire M. Fraser +32 more
TL;DR: W Whole genome comparative analyses revealed that the L.monocytogenes genomes are essentially syntenic, with the majority of genomic differences consisting of phage insertions, transposable elements and SNPs.
Journal ArticleDOI
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.
Jonathan A. Eisen,Karen E. Nelson,Ian T. Paulsen,John F. Heidelberg,Martin Wu,Robert J. Dodson,Robert T. DeBoy,Michelle L. Gwinn,William C. Nelson,Daniel H. Haft,Erin Hickey,Jeremy Peterson,A. Scott Durkin,James L. Kolonay,Fan Yang,Ingeborg Holt,Lowell Umayam,Tanya Mason,Michael B. Brenner,Terrance Shea,Debbie S. Parksey,William C. Nierman,Tamara Feldblyum,Cheryl L. Hansen,M. Brook Craven,Diana Radune,Jessica Vamathevan,Hoda Khouri,Owen White,Tanja M. Gruber,K. A. Ketchum,K. A. Ketchum,J. Craig Venter,Hervé Tettelin,Donald A. Bryant,Claire M. Fraser +35 more
TL;DR: Phylogenomic analysis reveals likely duplications of genes involved in biosynthetic pathways for photosynthesis and the metabolism of sulfur and nitrogen as well as strong similarities between metabolic processes in C. tepidum and many Archaeal species.