M
Marc Jan Bonder
Researcher at European Bioinformatics Institute
Publications - 117
Citations - 15800
Marc Jan Bonder is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: DNA methylation & Expression quantitative trait loci. The author has an hindex of 46, co-authored 108 publications receiving 10517 citations. Previous affiliations of Marc Jan Bonder include Netherlands Cancer Institute & German Cancer Research Center.
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Journal Article
Epigenome-wide association study meta-analysis of aggressive behavior
Jenny van Dongen,Matthew Suderman,Karen Sugden,Khadeeja Ismail,Rosa H. Mulder,Leanne K. Kupper,Mariona Bustamante,Silvia Alemany,Marc Jan Bonder,Priyanka Parmar,Estelle Lowry,Rick Jansen,Bart M. L. Baselmans,Michel G. Nivard,David L. Corcoran,Richie Poulton,J. Mill,Eilis Hannon,Louise Arseneault,Eero Vuoksimaa,Miina Ollikainen,Eva Corpeleijn,Lannie Ligthart,Caroline L Relton,Terrie E. Moffitt,Avshalom Caspi,Jaakko Kaprio,Henning Tiemeier,Harold Snieder,Jordi Sunyer,Lude Franke,Sylvain Sebert,null Marjo-riitta,Meike Bartels,Dorret I. Boomsma +34 more
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression
Urmo Võsa,Annique Claringbould,Harm-Jan Westra,Marc Jan Bonder,Patrick Deelen,Biao Zeng,Holger Kirsten,Ashis Saha,Roman Kreuzhuber,Seyhan Yazar,Harm Brugge,Roy Oelen,Dylan H. de Vries,Monique G. P. van der Wijst,Silva Kasela,Natalia Pervjakova,Isabel Alves,Marie-Julie Favé,Mawusse Agbessi,Mark W. Christiansen,Rick Jansen,Ilkka Seppälä,Lin Tong,Alexander Teumer,Katharina Schramm,Gibran Hemani,Joost Verlouw,Hanieh Yaghootkar,Reyhan Sönmez Flitman,Andrew A. Brown,Viktorija Kukushkina,Anette Kalnapenkis,Sina Rüeger,Eleonora Porcu,Jaanika Kronberg,Johannes Kettunen,Bernett Lee,Futao Zhang,Ting Qi,Jose Alquicira Hernandez,Wibowo Arindrarto,Frank Beutner,Julia Dmitrieva,Mahmoud Elansary,Benjamin P. Fairfax,Michel Georges,Bastiaan T. Heijmans,Alex W. Hewitt,Mika Kähönen,Yungil Kim,Julian C. Knight,Peter Kovacs,Knut Krohn,Shu Li,Markus Loeffler,Urko M. Marigorta,Hailang Mei,Yukihide Momozawa,Martina Mueller-Nurasyid,Matthias Nauck,Michel G. Nivard,Brenda W.J.H. Penninx,Jonathan K. Pritchard,Olli T. Raitakari,Olaf Rötzschke,Eline Slagboom,Coen D.A. Stehouwer,Michael Stumvoll,Patrick F. Sullivan,Peter A C 't Hoen,Joachim Thiery,Anke Tönjes,Jenny van Dongen,Maarten van Iterson,Jan H. Veldink,Uwe Voelker,Robert Warmerdam,Cisca Wijmenga,Morris A. Swertz,Anand Kumar Andiappan,Grant W. Montgomery,Samuli Ripatti,Markus Perola,Zoltán Kutalik,Emmanouil T. Dermitzakis,Sven Bergmann,Timothy M. Frayling,Joyce B. J. van Meurs,Holger Prokisch,Habibul Ahsan,Brandon L. Pierce,Terho Lehtimäki,Boomsma, Dorret, I,Bruce M. Psaty,Sina A. Gharib,Philip Awadalla,Lili Milani,Willem H. Ouwehand,Kate Downes,Oliver Stegle,Alexis Battle,Peter M. Visscher,Jian Yang,Markus Scholz,Joseph E. Powell,Greg Gibson,Tõnu Esko,Lude Franke +107 more
Journal ArticleDOI
Epigenome-wide association study meta-analysis of aggressive behavior
Jenny van Dongen,Matthew Suderman,Karen Sugden,Andreas G. Chiocchetti,Rosa H. Mulder,Jari Lahti,Leanne K. Küpers,Mariona Bustamante,Silvia Alemany,Marc Jan Bonder,Priyanka Parmar,Estelle Lowry,Rick Jansen,Bart M. L. Baselmans,Michel G. Nivard +14 more
Posted ContentDOI
novoRNABreak: local assembly for novel splice junction and fusion transcript detection from RNA-seq data
Yukun Tan,Vakul Mohanty,Shaoheng Liang,Jun Ma,Kun Hee Kim,Marc Jan Bonder,Xinghua Shi,Charles Lee,Zechen Chong,Kenneth S. Chen +9 more
TL;DR: In this article , a unified framework for cancer specific novel splice junction and fusion transcript detection in RNA-seq data obtained from human cancer samples is presented, which offers a tradeoff between the alignment-based and de novo whole transcriptome assembly (WTA) approaches.
Posted ContentDOI
In-depth genetic analysis of 6p21.3 reveals insights into associations between HLA types and complex traits and disease
Matteo D’Antonio,Reyna J,Agnieszka D'Antonio-Chronowska,Marc Jan Bonder,David Jakubosky,Matsui H,Smith En,Oliver Stegle,Nariai N,Kelly A. Frazer,Kelly A. Frazer +10 more
TL;DR: This study conducted an in-depth eQTL analysis using “personalized” transcripts, which significantly improved estimated expression levels of HLA genes, and showed HLA types have genetic associations independent from SNPs.