M
Martin Hammond
Researcher at European Bioinformatics Institute
Publications - 14
Citations - 5589
Martin Hammond is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Ensembl & Anopheles gambiae. The author has an hindex of 14, co-authored 14 publications receiving 5226 citations. Previous affiliations of Martin Hammond include Wellcome Trust & Wellcome Trust Sanger Institute.
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Journal ArticleDOI
The Ensembl genome database project
Tim Hubbard,Daniel Barker,Ewan Birney,Graham Cameron,Yuan Chen,Louise Clark,Tony Cox,James Cuff,Val Curwen,Thomas A. Down,Richard Durbin,Eduardo Eyras,James G. R. Gilbert,Martin Hammond,Lukasz Huminiecki,Arek Kasprzyk,Heikki Lehväslaiho,Philip Lijnzaad,Craig Melsopp,Emmanuel Mongin,Roger Pettett,Matthew Pocock,Simon C. Potter,Alistair G. Rust,Esther Schmidt,Stephen M. J. Searle,Guy Slater,James Smith,William Spooner,Arne Stabenau,Jim Stalker,Elia Stupka,Abel Ureta-Vidal,Imre Vastrik,Michele Clamp +34 more
TL;DR: The Ensembl database project provides a bioinformatics framework to organise biology around the sequences of large genomes and is a comprehensive source of stable automatic annotation of the human genome sequence, with confirmed gene predictions that have been integrated with external data sources.
Journal ArticleDOI
Genome sequence of Aedes aegypti, a major arbovirus vector
Vishvanath Nene,Jennifer R. Wortman,Daniel Lawson,Brian J. Haas,Chinnappa D. Kodira,Zhijian Jake Tu,Brendan J. Loftus,Zhiyong Xi,Karyn Megy,Manfred Grabherr,Quinghu Ren,Evgeny M. Zdobnov,Neil F. Lobo,Kathryn S. Campbell,Susan E. Brown,Maria de Fatima Bonaldo,Jingsong Zhu,Steven P. Sinkins,David G. Hogenkamp,Paolo Amedeo,Peter Arensburger,Peter W. Atkinson,Shelby L. Bidwell,Jim Biedler,Ewan Birney,Robert V. Bruggner,Javier Costas,Monique R. Coy,Jonathan Crabtree,Matt Crawford,Becky deBruyn,David DeCaprio,Karin Eiglmeier,Eric Eisenstadt,Hamza El-Dorry,William M. Gelbart,Suely Lopes Gomes,Martin Hammond,Linda Hannick,James R. Hogan,Michael H. Holmes,David M. Jaffe,J. Spencer Johnston,Ryan C. Kennedy,Hean Koo,Saul A. Kravitz,Evgenia V. Kriventseva,David Kulp,Kurt LaButti,Eduardo Lee,Song Li,Diane D. Lovin,Chunhong Mao,Evan Mauceli,Carlos Frederico Martins Menck,Jason R. Miller,Philip Montgomery,Akio Mori,Ana L. T. O. Nascimento,Horacio Naveira,Chad Nusbaum,Sinéad B. O'Leary,Joshua Orvis,Mihaela Pertea,Hadi Quesneville,Kyanne R. Reidenbach,Yu-Hui Rogers,Charles Roth,Jennifer R. Schneider,Michael C. Schatz,Martin Shumway,Mario Stanke,Eric O. Stinson,Jose M. C. Tubio,Janice P. Vanzee,Sergio Verjovski-Almeida,Doreen Werner,Owen White,Stefan Wyder,Qiandong Zeng,Qi Zhao,Yongmei Zhao,Catherine A. Hill,Alexander S. Raikhel,Marcelo B. Soares,Dennis L. Knudson,Norman H. Lee,James E. Galagan,Steven L. Salzberg,Ian T. Paulsen,George Dimopoulos,Frank H. Collins,Bruce W. Birren,Claire M. Fraser-Liggett,David W. Severson +94 more
TL;DR: A draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at approximately 1376 million base pairs is about 5 times the size of the genomes of the malaria vector Anopheles gambiae was presented in this paper.
Journal ArticleDOI
Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
Peter Arensburger,Karyn Megy,Robert M. Waterhouse,Robert M. Waterhouse,Jenica L. Abrudan,Paolo Amedeo,Beatriz García Antelo,Lyric C. Bartholomay,Shelby L. Bidwell,Elisabet Caler,Francisco Camara,Corey L. Campbell,Kathryn S. Campbell,Claudio Casola,Marta T Castro,Ishwar Chandramouliswaran,Sinéad B. Chapman,Scott Christley,Javier Costas,Eric Eisenstadt,Cédric Feschotte,Claire M. Fraser-Liggett,Roderic Guigó,Brian J. Haas,Martin Hammond,Bill S. Hansson,Janet Hemingway,Sharon R. Hill,Clint Howarth,Rickard Ignell,Ryan C. Kennedy,Chinnappa D. Kodira,Neil F. Lobo,Chunhong Mao,George F. Mayhew,Kristin Michel,Akio Mori,Nannan Liu,Horacio Naveira,Vishvanath Nene,Vishvanath Nene,Nam P. Nguyen,Matthew D. Pearson,Ellen J. Pritham,Daniela Puiu,Yumin Qi,Hilary Ranson,José M. C. Ribeiro,Hugh M Roberston,David W. Severson,Martin Shumway,Mario Stanke,Robert L. Strausberg,Cheng Sun,Granger G. Sutton,Zhijian Jake Tu,Jose M. C. Tubio,Maria F. Unger,Dana L. Vanlandingham,Albert J. Vilella,Owen White,Jared White,Charles S. Wondji,Jennifer R. Wortman,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Bruce W. Birren,Bruce M. Christensen,Frank H. Collins,Anthony J. Cornel,George Dimopoulos,Linda Hannick,Stephen Higgs,Gregory C. Lanzaro,Daniel Lawson,Norman H. Lee,Marc A. T. Muskavitch,Marc A. T. Muskavitch,Marc A. T. Muskavitch,Alexander S. Raikhel,Peter W. Atkinson +81 more
TL;DR: The genomic sequence of C. quinquefasciatus is described, which reveals distinctions related to vector capacities and habitat preferences, and confirmed that inoculation with unfamiliar bacteria prompted strong immune responses in Culex.
Journal ArticleDOI
An Overview of Ensembl
Ewan Birney,T. Daniel Andrews,Paul Bevan,Mario Caccamo,Yuan Chen,Laura Clarke,Guy Coates,James Cuff,Val Curwen,Tim J.R. Cutts,Thomas A. Down,Eduardo Eyras,Xosé M. Fernández-Suárez,Paul Gane,Brian Gibbins,James G. R. Gilbert,Martin Hammond,Hans-Rudolf Hotz,Vivek Iyer,Kerstin Jekosch,Andreas Kähäri,Arek Kasprzyk,Damian Keefe,Stephen Keenan,Heikki Lehväslaiho,Graham McVicker,Craig Melsopp,Patrick Meidl,Emmanuel Mongin,Roger Pettett,Simon C. Potter,Glenn Proctor,Mark Rae,Steve Searle,Guy Slater,Damian Smedley,James Smith,William Spooner,Arne Stabenau,James Stalker,Roy Storey,Abel Ureta-Vidal,K. Cara Woodwark,Graham Cameron,Richard Durbin,Anthony J. Cox,Tim Hubbard,Michele Clamp +47 more
TL;DR: The aims of Ensembl are to "widen" this biological integration to include other model organisms relevant to understanding human biology as they become available; to "deepen" this integration to provide an ever more seamless linkage between equivalent components in different species; and to provide further classification of functional elements in the genome that have been previously elusive.
Journal ArticleDOI
EnsMart: A Generic System for Fast and Flexible Access to Biological Data
Arek Kasprzyk,Damian Keefe,Damian Smedley,Darin London,William Spooner,Craig Melsopp,Martin Hammond,Philippe Rocca-Serra,Tony Cox,Ewan Birney +9 more
TL;DR: The EnsMart system, a generic data warehousing solution for fast and flexible querying of large biological data sets and integration with third-party data and tools, has been applied to Ensembl, where it extends its genomic browser capabilities, facilitating rapid retrieval of customized data sets.