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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Identification of differentialy expressed genes by restirction endonuclease-based gene expression fingerprinting
TL;DR: A novel method based on the consecutive restriction digestions of 3' terminal cDNA fragments to produce a fingerprint of gene expression enabled us to identify and clone the fragments of five genes expressed differentially in murine thymus and spleen.
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Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem
Xinyu Zhu,Xinyu Zhu,Stefano Campanaro,Laura Treu,Laura Treu,Rekha Seshadri,Natalia Ivanova,Panagiotis Kougias,Nikos C. Kyrpides,Irini Angelidaki +9 more
TL;DR: It is demonstrated that an enriched natural system, fueled only with acetate, could support a bacteria-dominated microbiota employing a multi-trophic methanogenic process, and proposed that specific microbes of the community were forming symbiotic relationships, thus reducing the biosynthetic burden of individual members.
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Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge.
Shaomei He,Victor Kunin,Matthew Haynes,Hector Garcia Martin,Natalia Ivanova,Forest Rohwer,Philip Hugenholtz,Katherine D. McMahon +7 more
TL;DR: The majority of upregulated genes in the aerobic sample are predicted to encode functions such as transcription, translation and protein translocation, reflecting the rapid growth phase of Accumulibacter shortly after being switched to aerobic conditions.
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.
Chrizelle W. Beukes,Marike Palmer,Puseletso Manyaka,Wai Y. Chan,Juanita R. Avontuur,Elritha Van Zyl,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishnaveni Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chris Daum,Nicole Shapiro,Victor Markowitz,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Jochen Blom,William B. Whitman,Stephanus N. Venter,Emma Theodora Steenkamp +23 more
TL;DR: The amino acid and nucleotide sequences of 106 conserved proteins from 92 species are used to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato and suggest 13 new combinations for those species previously described as members of Burk holderia but that form part of Caballeronia.
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Draft Sequencing and Comparative Genomics of Xylella fastidiosa Strains Reveal Novel Biological Insights
Anamitra Bhattacharyya,Stephanie Stilwagen,Gary Reznik,Helene Feil,William S. Feil,Iain Anderson,Axel Bernal,Mark D'Souza,Natalia Ivanova,Vinayak Kapatral,Niels Larsen,Tamara Los,Athanasios Lykidis,Eugene Selkov,Theresa L. Walunas,Alexander H. Purcell,Robert Edwards,Trevor Hawkins,Robert Haselkorn,Ross Overbeek,Nikos C. Kyrpides,Paul Predki +21 more
TL;DR: A comparative analysis of one complete and two draft genome sequences of the phytopathogenic bacterium, Xylella fastidiosa, which causes serious disease in plants, is reported, and an unusual respiration machinery is spotlight as a potential target for biological control.