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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Journal ArticleDOI
Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus
Sara E. Blumer-Schuette,Inci Ozdemir,Dhaval Mistry,Susan Lucas,Alla Lapidus,Jan Fang Cheng,Lynne Goodwin,Samuel Pitluck,Miriam Land,Loren Hauser,Tanja Woyke,Natalia Mikhailova,Amrita Pati,Nikos C. Kyrpides,Natalia Ivanova,John C. Detter,Karen Walston-Davenport,Shunsheng Han,Michael W. W. Adams,Robert M. Kelly +19 more
TL;DR: Seven completed and one draft-phase Caldicellulosiruptor genomes suggest that, while central metabolism is highly conserved, significant differences in glycoside hydrolase inventories and numbers of carbohydrate transporters exist, a finding which likely relates to variability observed in plant biomass degradation capacity.
Journal ArticleDOI
A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey.
Wayne Reeve,Julie Ardley,Rui Tian,Leila Eshragi,Je Won Yoon,Pinyaruk Ngamwisetkun,Rekha Seshadri,Natalia Ivanova,Nikos C. Kyrpides,Nikos C. Kyrpides +9 more
TL;DR: The Vavilov centers of diversity and GEBA-RNB projects will sequence 107 RNB strains, isolated from diverse legume hosts in various geographic locations around the world, which will contribute to the understanding of the effects of biogeography on the evolution of different species of RNB, as well as the mechanisms that determine the specificity and effectiveness of nodulation and symbiotic nitrogen fixation by RNB with diverse legumes.
Journal ArticleDOI
Genome Sequence of the Arctic Methanotroph Methylobacter tundripaludum SV96
Mette M. Svenning,Anne Grethe Hestnes,Ingvild Wartiainen,Lisa Y. Stein,Martin G. Klotz,Marina G. Kalyuzhnaya,Anja Spang,Françoise Bringel,Stéphane Vuilleumier,Aurélie Lajus,Claudine Médigue,David Bruce,Jan Fang Cheng,Lynne Goodwin,Natalia Ivanova,James Han,Cliff Han,Loren Hauser,Brittany Held,Miriam Land,Alla Lapidus,Susan Lucas,Matt Nolan,Sam Pitluck,Tanja Woyke +24 more
TL;DR: These genome data provide the basis to investigate M. tundripaludum SV96, identified as a major player in the biogeochemistry of Arctic environments.
Journal ArticleDOI
Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers,Nikos C. Kyrpides,Ramunas Stepanauskas,Miranda Harmon-Smith,Devin F. R. Doud,T. B. K. Reddy,Frederik Schulz,Jessica K. Jarett,Adam R. Rivers,Emiley A. Eloe-Fadrosh,Susannah G. Tringe,Natalia Ivanova,Alex Copeland,Alicia Clum,Eric D. Becraft,Rex R. Malmstrom,Bruce W. Birren,Mircea Podar,Peer Bork,George M. Weinstock,George M. Garrity,Jeremy A. Dodsworth,Shibu Yooseph,Granger G. Sutton,Frank Oliver Glöckner,Jack A. Gilbert,William C. Nelson,Steven J. Hallam,Sean P. Jungbluth,Thijs J. G. Ettema,Scott Tighe,Konstantinos T. Konstantinidis,Wen Tso Liu,Brett J. Baker,Thomas Rattei,Jonathan A. Eisen,Brian P. Hedlund,Katherine D. McMahon,Noah Fierer,Rob Knight,Robert D. Finn,Guy Cochrane,Ilene Karsch-Mizrachi,Gene W. Tyson,Christian Rinke,Alla Lapidus,Folker Meyer,Pelin Yilmaz,Donovan H. Parks,A. Murat Eren,Lynn M. Schriml,Jillian F. Banfield,Philip Hugenholtz,Tanja Woyke +53 more
TL;DR: This research presents a new probabilistic approach to estimating the response of the immune system to EMTs using a simple, straightforward, and scalable approach called “spot-spot analysis”.
Journal ArticleDOI
Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
Michael Pester,Evelyne Brambilla,Didier Alazard,Thomas Rattei,Thomas Weinmaier,James Han,Susan Lucas,Alla Lapidus,Jan Fang Cheng,Lynne Goodwin,Sam Pitluck,Lin Peters,Galina Ovchinnikova,Hazuki Teshima,John C. Detter,John C. Detter,Cliff S. Han,Cliff S. Han,Roxanne Tapia,Roxanne Tapia,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Nikos C. Kyrpides,Natalia Ivanova,Ioanna Pagani,Marcel Huntmann,Chia-Lin Wei,Karen W. Davenport,Hajnalka E. Daligault,Patrick S. G. Chain,Amy Chen,Konstantinos Mavromatis,Victor Markowitz,Ernest Szeto,Natalia Mikhailova,Amrita Pati,Michael Wagner,Tanja Woyke,Bernard Ollivier,Hans-Peter Klenk,Stefan Spring,Alexander Loy +43 more
TL;DR: Seven sulfate-reducing bacteria belonging to the Firmicutes will give insights into the genetic repertoire and evolution of sulfate reducers typically thriving in terrestrial environments and able to degrade toluene.