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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation
Michelle A. Allen,Federico M. Lauro,Timothy J. Williams,Dominic Burg,Khawar Sohail Siddiqui,Davide De Francisci,Kevin Wai Yin Chong,Oliver Pilak,Hwee H Chew,Matthew Z De Maere,Lily Ting,Marilyn Katrib,Charmaine Ng,Kevin R. Sowers,Michael Y. Galperin,Iain Anderson,Natalia Ivanova,Eileen Dalin,Michele Martinez,Alla Lapidus,Loren Hauser,Miriam Land,Torsten Thomas,Ricardo Cavicchioli +23 more
TL;DR: A capacity for this model psychrophile to evolve through genome plasticity that enables adaptation to the cold, and to the biological and physical changes that have occurred over the last several thousand years as it adapted from a marine to an Antarctic lake environment is revealed.
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A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae
David A. C. Beck,Marina G. Kalyuzhnaya,Stephanie Malfatti,Stephanie Malfatti,Susannah G. Tringe,Tijana Glavina del Rio,Natalia Ivanova,Mary E. Lidstrom,Ludmila Chistoserdova +8 more
TL;DR: The relevant abundances of the M methylococcaceae and the Methylophilaceae and their coordinated response to methane and nitrate suggest that these species may be engaged in cooperative behavior, the nature of which remains unknown.
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Large-scale contamination of microbial isolate genomes by Illumina PhiX control
Supratim Mukherjee,Marcel Huntemann,Natalia Ivanova,Nikos C. Kyrpides,Nikos C. Kyrpides,Amrita Pati +5 more
TL;DR: The presence of PhiX contamination in several publicly available isolate genomes can result in additional errors when such data are used in comparative genomics analyses, and necessitates better measures to proofread raw sequences before releasing them to the broader scientific community.
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A bacterial metapopulation adapts locally to phage predation despite global dispersal
Victor Kunin,Shaomei He,Falk Warnecke,S. Brook Peterson,Hector Garcia Martin,Matthew Haynes,Natalia Ivanova,Linda L. Blackall,Mya Breitbart,Forest Rohwer,Katherine D. McMahon,Philip Hugenholtz +11 more
TL;DR: It is concluded that CAP strains disperse globally but must adapt to phages predation pressure locally, providing natural targets for "kill-the-winner" phage predation.
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Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
Emiley A. Eloe-Fadrosh,David Paez-Espino,Jessica K. Jarett,Peter F. Dunfield,Brian P. Hedlund,Anne E. Dekas,Stephen E. Grasby,Allyson L. Brady,Hailiang Dong,Brandon R. Briggs,Wen-Jun Li,Danielle Goudeau,Rex R. Malmstrom,Amrita Pati,Jennifer Pett-Ridge,Edward M. Rubin,Edward M. Rubin,Tanja Woyke,Nikos C. Kyrpides,Natalia Ivanova +19 more
TL;DR: Genome reconstruction indicates a heterotrophic lifestyle with conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes, and co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage.