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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Journal ArticleDOI
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges.
Janine Kamke,Alexander Sczyrba,Alexander Sczyrba,Natalia Ivanova,Patrick Schwientek,Christian Rinke,Kostas Mavromatis,Tanja Woyke,Ute Hentschel +8 more
TL;DR: It is proposed that Poribacteria are well adapted to an existence in the sponge extracellular matrix and may be viewed as efficient scavengers and recyclers of a particular suite of carbon compounds that are unique to sponges as microbial ecosystems.
Journal ArticleDOI
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains
Anamitra Bhattacharyya,Stephanie Stilwagen,Natalia Ivanova,Mark D'Souza,Axel Bernal,Athanasios Lykidis,Vinayak Kapatral,Iain Anderson,Niels Bent Larsen,Tamara Los,Gary Reznik,Eugene Selkov,Theresa L. Walunas,Helene Feil,William S. Feil,Alexander H. Purcell,Jean-Louis Lassez,Trevor Hawkins,Robert Haselkorn,Ross Overbeek,Paul Predki,Nikos C. Kyrpides +21 more
TL;DR: A comparative analysis of the complete genome of Xf pv citrus and the partial genomes of two recently sequenced strains of this species, demonstrating the effectiveness of comparative analysis strategies in the interpretation of genomes that are closely related.
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Complete genome sequence of the Medicago microsymbiont Ensifer ( Sinorhizobium ) medicae strain WSM419
Wayne Reeve,Patrick S. G. Chain,Patrick S. G. Chain,Graham O’Hara,Julie Ardley,Kemanthi Nandesena,Lambert Bräu,Ravi Tiwari,Stephanie Malfatti,Stephanie Malfatti,Hajnalka Kiss,Hajnalka Kiss,Alla Lapidus,Alex Copeland,Matt Nolan,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Natalia Ivanova,Konstantinos Mavromatis,Victor Markowitz,Nikos C. Kyrpides,Margaret Gollagher,Ron Yates,Michael J. Dilworth,John Howieson +28 more
TL;DR: This is the first report of a complete genome sequence for a microsymbiont of the group of annual medic species adapted to acid soils and it is revealed that its genome size is 6,817,576 bp encoding 6,518 protein-coding genes and 81 RNA only encoding genes.
Journal ArticleDOI
Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data.
TL;DR: This approach relies on an expanded and curated set of viral protein families used as bait to identify viral sequences directly from metagenomic assemblies and describes the specific parameters for a nucleotide-sequence-identity-based method of organizing the viral sequences into quasi-species taxonomic-level groups.
Journal ArticleDOI
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
Yun Juan Chang,Yun Juan Chang,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Olga Chertkov,Olga Chertkov,Tijana Glavina del Rio,Matt Nolan,Alex Copeland,Hope Tice,Jan Fang Cheng,Susan Lucas,Cliff Han,Cliff Han,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Natalia Ivanova,Galina Ovchinikova,Amrita Pati,Amy Chen,Krishna Palaniappan,Konstantinos Mavromatis,Konstantinos Liolios,Thomas Brettin,Thomas Brettin,Anne Fiebig,Manfred Rohde,Birte Abt,Markus Göker,John C. Detter,John C. Detter,Tanja Woyke,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk,Alla Lapidus +43 more
TL;DR: The Ktedonobacter racemifer corrig genome is the largest prokaryotic genome reported so far and comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance.