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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Journal ArticleDOI
Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities
Joel E. Kostka,Stefan J. Green,Lavanya Rishishwar,Om Prakash,Lee S. Katz,Leonardo Mariño-Ramírez,I. King Jordan,Christine Munk,Natalia Ivanova,Natalia Mikhailova,David B. Watson,Steven D. Brown,Anthony V. Palumbo,Scott C. Brooks +13 more
TL;DR: The first genome sequences for six strains of Rhodanobacter species isolated from a variety of soil and subsurface environments suggest that the environmental role of bacteria from the genus RhodanOBacter should be reevaluated.
Journal ArticleDOI
The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes
David A. C. Beck,Tami L. McTaggart,Usanisa Setboonsarng,Alexey Vorobev,Marina G. Kalyuzhnaya,Natalia Ivanova,Lynne Goodwin,Tanja Woyke,Mary E. Lidstrom,Ludmila Chistoserdova +9 more
TL;DR: By comparing pairs of closely related genomes, it is uncovered that site-specific recombination is the main means of genomic evolution and strain divergence, including lateral transfers of genes from both closely- and distantly related taxa.
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Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.
Konstantinos Mavromatis,Ken Chu,Natalia Ivanova,Sean D. Hooper,Victor M. Markowitz,Nikos C. Kyrpides +5 more
TL;DR: The data management system of the Integrated Microbial Genomes (IMG) is used as the framework to implement and explore the power of gene context analysis methods because it provides one of the largest available genome integrations.
Journal ArticleDOI
Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
Alla Lapidus,Alicia Clum,Kurt LaButti,Marina G. Kaluzhnaya,Sujung Lim,David A. C. Beck,Tijana Glavina del Rio,Matt Nolan,Konstantinos Mavromatis,Marcel Huntemann,Susan Lucas,Mary E. Lidstrom,Natalia Ivanova,Ludmila Chistoserdova +13 more
TL;DR: It is demonstrated that metabolic potentials can vary significantly between different species of Methylophilaceae, including organisms inhabiting the very same environment, and genetic divergence among the members of this family may be responsible for their specialized and nonredundant functions in C₁ cycling.
Journal ArticleDOI
Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers
Wayne Reeve,Graham O’Hara,Patrick S. G. Chain,Patrick S. G. Chain,Julie Ardley,Lambert Bräu,Kemanthi Nandesena,Ravi Tiwari,Alex Copeland,Matt Nolan,Cliff Han,Cliff Han,Thomas Brettin,Miriam Land,Miriam Land,Galina Ovchinikova,Natalia Ivanova,Konstantinos Mavromatis,Victor Markowitz,Nikos C. Kyrpides,Vanessa Melino,Matthew D. Denton,Ron Yates,John Howieson +23 more
TL;DR: This is the first completed genome sequence for a microsymbiont of annual clovers, and it is revealed that its genome size is 7,418,122 bp encoding 7,232 protein-coding genes and 61 RNA-only encoding genes.