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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Journal ArticleDOI
Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.
Lee P. Hutt,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishnaveni Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chris Daum,Nicole Shapiro,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Rich Boden +14 more
TL;DR: The genome sequence, annotation and characteristics of T. thioparus, one of first two isolated strains of inorganic sulfur-oxidising Bacteria, are reported, which is an obligate chemolithoautotroph that conserves energy from the oxidation of reduced in organic sulfur compounds using the Kelly-Trudinger pathway and uses it to fix carbon dioxide.
Journal ArticleDOI
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575T)
Stefan Spring,Alla Lapidus,Maren Schröder,Dorothea Gleim,David Sims,Linda Meincke,Tijana Glavina del Rio,Hope Tice,Alex Copeland,Jan Fang Cheng,Susan Lucas,Feng Chen,Matt Nolan,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Natalia Ivanova,Konstantinos Mavromatis,Natalia Mikhailova,Amrita Pati,Amy Chen,Krishna Palaniappan,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Cynthia D. Jeffries,Cynthia D. Jeffries,Patrick S. G. Chain,Patrick S. G. Chain,Elizabeth Saunders,Elizabeth Saunders,Thomas Brettin,Thomas Brettin,John C. Detter,John C. Detter,Markus Göker,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk,Cliff Han,Cliff Han +49 more
TL;DR: This is the first completed genome sequence of a Desulfotomaculum species with validly published name and it is able to oxidize substrates completely to carbon dioxide with sulfate as the electron acceptor, which is reduced to hydrogen sulfide.
Journal ArticleDOI
Complete genome sequence of Thermomonospora curvata type strain (B9 T )
Olga Chertkov,Olga Chertkov,Johannes Sikorski,Matt Nolan,Alla Lapidus,Susan Lucas,Tijana Glavina del Rio,Hope Tice,Jan Fang Cheng,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Konstantinos Liolios,Natalia Ivanova,Konstantinos Mavromatis,Natalia Mikhailova,Galina Ovchinnikova,Amrita Pati,Amy Chen,Krishna Palaniappan,Olivier Duplex Ngatchou Djao,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Cynthia D. Jeffries,Cynthia D. Jeffries,Thomas Brettin,Thomas Brettin,Cliff Han,Cliff Han,John C. Detter,John C. Detter,Manfred Rohde,Markus Göker,Tanja Woyke,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Hans-Peter Klenk,Nikos C. Kyrpides +45 more
TL;DR: This is the first complete genome sequence of a member of the family Thermomonosporaceae, and the features of this organism are described, together with thecomplete genome sequence and annotation.
Journal ArticleDOI
VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
Joan Carles Pons,David Paez-Espino,Gabriel Riera,Natalia Ivanova,Nikos C. Kyrpides,Mercè Llabrés +5 more
TL;DR: In this article, a tool called VPF-Class is proposed for taxonomic classification and host prediction of uncultured virus contigs based on the assignment of their proteins to a set of classified VPFs.
Journal ArticleDOI
Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
Marco Dogs,Sonja Voget,Hazuki Teshima,Jörn Petersen,Karen W. Davenport,Hajnalka Dalingault,Amy Chen,Amrita Pati,Natalia Ivanova,Lynne Goodwin,Lynne Goodwin,Patrick S. G. Chain,John C. Detter,John C. Detter,Sonja Standfest,Manfred Rohde,Sabine Gronow,Nikos C. Kyrpides,Tanja Woyke,Meinhard Simon,Hans-Peter Klenk,Markus Göker,Thorsten Brinkhoff +22 more
TL;DR: The complete genome sequence and annotation of this bacterium with a special focus on the secondary metabolism is described and it is compared with the genomes of the Phaeobacter inhibens strains DSM 17395 and DSM 24588 (2.10), selected because of the close phylogenetic relationship based on the 16S rRNA gene sequences.