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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Journal ArticleDOI
Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence.
Atteyet F. Yassin,Stefan Langenberg,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishnaveni Palaniappan,Neha Varghese,Natalia Mikhailova,Supratim Mukherjee,T. B. K. Reddy,Chris Daum,Nicole Shapiro,Natalia Ivanova,Tanja Woyke,Nikos C. Kyrpides +14 more
TL;DR: Resistance to ciprofloxacin occurs by mutation in chromosomal genes that encode the subunits of DNA-gyrase and topisomerase IV (ParC) enzymes, while resistant to metronidazole was due to the frxA gene, which encodes NADPH-flavin oxidoreductase.
Journal ArticleDOI
Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.
Scott C. Thomas,Devon Payne,Kevin O. Tamadonfar,Cale O. Seymour,Jian-Yu Jiao,Senthil K. Murugapiran,Senthil K. Murugapiran,Dengxun Lai,Rebecca Lau,Rebecca Lau,Benjamin P. Bowen,Benjamin P. Bowen,Leslie P. Silva,Leslie P. Silva,Katherine B. Louie,Katherine B. Louie,Marcel Huntemann,Marcel Huntemann,Alicia Clum,Alicia Clum,Alex Spunde,Alex Spunde,Manoj Pillay,Manoj Pillay,Krishnaveni Palaniappan,Krishnaveni Palaniappan,Neha Varghese,Neha Varghese,Natalia Mikhailova,Natalia Mikhailova,I-Min Chen,I-Min Chen,Dimitrios Stamatis,Dimitrios Stamatis,T. B. K. Reddy,T. B. K. Reddy,Ronan C. O'Malley,Ronan C. O'Malley,Chris Daum,Chris Daum,Nicole Shapiro,Nicole Shapiro,Natalia Ivanova,Natalia Ivanova,Nikos C. Kyrpides,Nikos C. Kyrpides,Tanja Woyke,Tanja Woyke,Emiley A. Eloe-Fadrosh,Emiley A. Eloe-Fadrosh,Trinity L. Hamilton,Paul Dijkstra,Jeremy A. Dodsworth,Trent R. Northen,Trent R. Northen,Wen-Jun Li,Brian P. Hedlund +56 more
TL;DR: A comparative genomic analysis of the draft genome of T. hugenholtzii JAD2T and eight closely related metagenome-assembled genomes (MAGs) from geothermal sites in China, Japan, and the United States is presented in this paper.
Journal ArticleDOI
Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
Faten Ghodhbane-Gtari,Nicholas Beauchemin,Moussa Louati,Imen Nouioui,Amir Ktari,Karima Hezbri,Abdellatif Gueddou,Amy Chen,Marcel Huntemann,Natalia Ivanova,Nikos C. Kyrpides,Victor Markowitz,Kostas Mavrommatis,Ioanna Pagani,Arnab Sen,Luis Gabriel Wall,Tanja Woyke,Maher Gtari,Louis S. Tisa +18 more
TL;DR: The improved high-quality draft genome sequence contains 8,787,999 bp with a 68.90% GC content and 7,307 predicted protein-coding genes.
Journal ArticleDOI
Complete Genome Sequence of the hyperthermophilic sulfate-reducing bacterium Thermodesulfobacterium geofontis OPF15T
James Elkins,Scott D. Hamilton-Brehm,Susan Lucas,James Han,Alla Lapidus,Jan Fang Cheng,Lynne Goodwin,Sam Pitluck,Lin Peters,Natalia Mikhailova,Karen W. Davenport,John C. Detter,John C. Detter,Cliff S. Han,Cliff S. Han,Roxanne Tapia,Roxanne Tapia,Miriam Land,Loren Hauser,Nikos C. Kyrpides,Natalia Ivanova,Ioanna Pagani,David G Bruce,Tanja Woyke,Robert W. Cottingham +24 more
TL;DR: Thermodesulfobacterium geofontis OPF15T was isolated from Obsidian Pool, Yellowstone National Park, and grows optimally at 83°C, and the 1.6-Mb genome sequence was finished at the Joint Genome Institute and has been deposited for future genomic studies pertaining to microbial processes and nutrient cycles in high-temperature environments.
Journal ArticleDOI
Genome sequence of Burkholderia mimosarum strain LMG 23256T, a Mimosa pigra microsymbiont from Anso, Taiwan
Anne Willems,Rui Tian,Lambert Bräu,Lynne Goodwin,James Han,Konstantinos Liolios,Marcel Huntemann,Amrita Pati,Tanja Woyke,Konstantinos Mavrommatis,Victor Markowitz,Natalia Ivanova,Nikos C. Kyrpides,Wayne Reeve +13 more
TL;DR: An aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Mimosa pigra, and is highly effective at fixing nitrogen with M. pigra.