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Natalia Ivanova
Researcher at Lawrence Berkeley National Laboratory
Publications - 557
Citations - 40838
Natalia Ivanova is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 81, co-authored 543 publications receiving 35008 citations. Previous affiliations of Natalia Ivanova include Engelhardt Institute of Molecular Biology & Yale University.
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Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.
TL;DR: It is shown that approximately 10% of environmental microbial sequences might be missed from classical PCR-based SSU rRNA gene surveys, mostly members of the Candidate Phyla Radiation (CPR) and as yet uncharacterized Archaea.
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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.
Simon Roux,Mart Krupovic,Rebecca A. Daly,Adair L. Borges,Stephen Nayfach,Frederik Schulz,Allison Sharrar,Paula B. Matheus Carnevali,Jan Fang Cheng,Natalia Ivanova,Joseph Bondy-Denomy,Kelly C. Wrighton,Tanja Woyke,Axel Visel,Nikos C. Kyrpides,Emiley A. Eloe-Fadrosh +15 more
TL;DR: A machine learning approach was used to recover over 10,000 inovirus-like sequences from existing microbial genomes and metagenomes, consequently proposing the reclassification of the Inoviridae family to a viral order, and uncover the previously unrecognized diversity of these viruses across hosts and environments.
Journal Article
Symbiosis insights through metagenomic analysis of a microbial consortium
Tanja Woyke,Hanno Teeling,Natalia Ivanova,Marcel Hunteman,Michael Richter,Frank Oliver Gloeckner,Dario Boffelli,Kerrie Barry,Harris Shapiro,Iain Anderson,Ernest Szeto,Nikos C. Kyrpides,Marc Mussmann,Rudolf Amann,Claudia Bergin,Caroline Ruehland,Edward M. Rubin,Nicole Dubilier +17 more
TL;DR: A metagenomic approach is used to describe four co-occurring symbionts from the marine oligochaete Olavius algarvensis, a worm lacking a mouth, gut and nephridia to propose a model that describes how the versatile metabolism within this symbiotic consortium provides the host with an optimal energy supply as it shuttles between the upper oxic and lower anoxic coastal sediments that it inhabits.
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The Genome Sequence of Psychrobacter arcticus 273-4, a Psychroactive Siberian Permafrost Bacterium, Reveals Mechanisms for Adaptation to Low-Temperature Growth
Héctor L. Ayala-del-Río,Héctor L. Ayala-del-Río,Patrick S. G. Chain,Patrick S. G. Chain,Joseph J. Grzymski,Monica A. Ponder,Natalia Ivanova,Peter W. Bergholz,Genevive Di Bartolo,Loren Hauser,Miriam Land,Corien Bakermans,Debora F. Rodrigues,Joel A. Klappenbach,Dan Zarka,Frank W. Larimer,Paul G. Richardson,Alison E. Murray,Michael F. Thomashow,James M. Tiedje +19 more
TL;DR: Psychrobacter arcticus strain 273-4, which grows at temperatures as low as −10°C, is the first cold-adapted bacterium from a terrestrial environment whose genome was sequenced, and comparative genome analysis indicated there is reduced use of the acidic amino acids and proline and arginine, which is consistent with increased protein flexibility at low temperatures.
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.
Stephen Nayfach,David Paez-Espino,David Paez-Espino,Lee Call,Lee Call,Soo Jen Low,Hila Sberro,Natalia Ivanova,Natalia Ivanova,Amy D Proal,Michael A. Fischbach,Ami S. Bhatt,Philip Hugenholtz,Nikos C. Kyrpides,Nikos C. Kyrpides +14 more
TL;DR: The Metagenomic Gut Virus catalogue as discussed by the authors contains 189,680 genomes from 11,810 publicly available human stool metagenomes and identified 54,118 candidate viral species, 92% of which were not found in existing databases.