N
Noelia Carrasquilla-Garcia
Researcher at University of California, Davis
Publications - 31
Citations - 2377
Noelia Carrasquilla-Garcia is an academic researcher from University of California, Davis. The author has contributed to research in topics: Population & Genome. The author has an hindex of 17, co-authored 30 publications receiving 1904 citations. Previous affiliations of Noelia Carrasquilla-Garcia include University of California & University of California, Berkeley.
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Journal ArticleDOI
Draft genome sequence of chickpea ( Cicer arietinum ) provides a resource for trait improvement
Rajeev K. Varshney,Rajeev K. Varshney,Chi Song,Rachit K. Saxena,Sarwar Azam,Sheng Yu,Andrew G. Sharpe,Steven B. Cannon,Jong-Min Baek,Benjamin D. Rosen,Bunyamin Tar’an,Teresa Millán,Xudong Zhang,Larissa Ramsay,Aiko Iwata,Ying Wang,William Nelson,Andrew Farmer,Pooran M. Gaur,Carol Soderlund,R. Varma Penmetsa,Chunyan Xu,Arvind K. Bharti,Weiming He,Peter Winter,Shancen Zhao,James K. Hane,Noelia Carrasquilla-Garcia,Janet A. Condie,Hari D. Upadhyaya,Ming-Cheng Luo,Mahendar Thudi,C. L. L. Gowda,Narendra Singh,Judith Lichtenzveig,Krishna K. Gali,Josefa Rubio,N. Nadarajan,Jaroslav Dolezel,Kailash C. Bansal,Xun Xu,David Edwards,Gengyun Zhang,Guenter Kahl,Juan Gil,Karam B. Singh,Karam B. Singh,Swapan K. Datta,Scott A. Jackson,Jun Wang,Jun Wang,Douglas R. Cook +51 more
TL;DR: This work reports the ∼738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes, and identifies targets of both breeding-associated genetic sweeps and breeding- associated balancing selection.
Journal ArticleDOI
Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
Pavana J Hiremath,Pavana J Hiremath,Ashok Kumar,R. V. Penmetsa,Andrew Farmer,Jessica A. Schlueter,Siva K. Chamarthi,Adam M. Whaley,Noelia Carrasquilla-Garcia,Pooran M. Gaur,Hari D. Upadhyaya,Polavarapu B. Kavi Kishor,Trushar Shah,Douglas R. Cook,Rajeev K. Varshney +14 more
TL;DR: Development of these cost-effective CKAMs for SNP genotyping will be useful not only for genetics research and breeding applications in chickpea, but also for utilizing genome information from other sequenced or model legumes.
Journal ArticleDOI
Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.)
Rajeev K. Varshney,R. V. Penmetsa,Sutapa Dutta,P. L. Kulwal,Rachit K. Saxena,Subhojit Datta,Tilak Raj Sharma,Benjamin D. Rosen,Noelia Carrasquilla-Garcia,Andrew Farmer,Anuja Dubey,Kulbhushan Saxena,Jinliang Gao,B. Fakrudin,Meenakshi Singh,Bikram Singh,K. B. Wanjari,Mei Yuan,Rakesh K. Srivastava,Andrzej Kilian,Hari D. Upadhyaya,Nalini Mallikarjuna,Christopher D. Town,G. E. Bruening,Guohao He,Greg D. May,R. McCombie,Scott A. Jackson,Nirupma Singh,Douglas R. Cook +29 more
TL;DR: The collaborative efforts of several research groups under the umbrella of PGI are making significant progress in improving molecular tools in pigeonpea and should significantly benefit pigeon pea genetics and breeding.
Journal ArticleDOI
Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals
Estíbaliz Larrainzar,Brendan K. Riely,Sang Cheol Kim,Noelia Carrasquilla-Garcia,Hee-Ju Yu,Hyun Ju Hwang,Hyun Ju Hwang,Mijin Oh,Goon Bo Kim,Anandkumar K. Surendrarao,Deborah Chasman,Alireza Fotuhi Siahpirani,R. V. Penmetsa,Gang-Seob Lee,Namshin Kim,Sushmita Roy,Jeong-Hwan Mun,Douglas R. Cook +17 more
TL;DR: This work combines transcriptome sequencing with molecular genetics and network analysis to quantify and categorize the transcriptional changes occurring in roots of Medicago truncatula from minutes to days after inoculation with Sinorhizobium medicae, and models Nod factor- and ET-regulated signaling networks using MERLIN, a regulatory network inference algorithm.
Journal ArticleDOI
Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes
Rachit K. Saxena,R. Varma Penmetsa,Hari D. Upadhyaya,Ashok Kumar,Noelia Carrasquilla-Garcia,Jessica A. Schlueter,Andrew Farmer,Adam M. Whaley,Birinchi Kumar Sarma,Birinchi Kumar Sarma,Gregory D. May,Douglas R. Cook,Rajeev K. Varshney,Rajeev K. Varshney +13 more
TL;DR: Mapped PKAMs showed a higher degree of synteny with the genome of Glycine max followed by Medicago truncatula and Lotus japonicus and least with Vigna unguiculata and an integrated genetic map of 996.21 cM was constructed.