P
Pavel Vopalensky
Researcher at European Bioinformatics Institute
Publications - 11
Citations - 1068
Pavel Vopalensky is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Cellular differentiation & Cephalochordate. The author has an hindex of 9, co-authored 11 publications receiving 992 citations. Previous affiliations of Pavel Vopalensky include Academy of Sciences of the Czech Republic.
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Journal ArticleDOI
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
Linda Z. Holland,Ricard Albalat,Kaoru Azumi,Èlia Benito-Gutiérrez,Matthew J. Blow,Marianne Bronner-Fraser,Frédéric Brunet,Thomas Butts,Simona Candiani,Larry J. Dishaw,Larry J. Dishaw,David E. K. Ferrier,David E. K. Ferrier,Jordi Garcia-Fernàndez,Jeremy J. Gibson-Brown,Carmela Gissi,Adam Godzik,Finn Hallböök,Dan Hirose,Kazuyoshi Hosomichi,Tetsuro Ikuta,Hidetoshi Inoko,Masanori Kasahara,Jun Kasamatsu,Takeshi Kawashima,Takeshi Kawashima,Ayuko Kimura,Masaaki Kobayashi,Zbynek Kozmik,Kaoru Kubokawa,Vincent Laudet,Gary W. Litman,Gary W. Litman,Alice C. McHardy,Alice C. McHardy,Daniel Meulemans,Masaru Nonaka,Robert Piotr Olinski,Zeev Pancer,Len A. Pennacchio,Mario Pestarino,Jonathan P. Rast,Isidore Rigoutsos,Marc Robinson-Rechavi,Graeme J. Roch,Hidetoshi Saiga,Yasunori Sasakura,Masanobu Satake,Yutaka Satou,Michael Schubert,Nancy M. Sherwood,Takashi Shiina,Naohito Takatori,Naohito Takatori,Javier Tello,Pavel Vopalensky,Shuichi Wada,Anlong Xu,Yuzhen Ye,Keita Yoshida,Fumiko Yoshizaki,Jr-Kai Yu,Qing Zhang,Christian M. Zmasek,Pieter J. de Jong,Kazutoyo Osoegawa,Nicholas H. Putnam,Daniel S. Rokhsar,Daniel S. Rokhsar,Noriyuki Satoh,Noriyuki Satoh,Peter W. H. Holland +71 more
TL;DR: The results indicate that the amphioxus genome is elemental to an understanding of the biology and evolution of nonchordate deuterostomes, invertebrate chordates, and vertebrates.
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Assembly of the cnidarian camera-type eye from vertebrate-like components
Zbynek Kozmik,Jana Ruzickova,Kristyna Jonasova,Yoshifumi Matsumoto,Pavel Vopalensky,Iryna Kozmikova,Hynek Strnad,Shoji Kawamura,Joram Piatigorsky,Václav Pačes,Čestmír Vlček +10 more
TL;DR: It is shown that camera-type eyes of the cubozoan jellyfish, Tripedalia cystophora, use genetic building blocks typical of vertebrate eyes, namely, a ciliary phototransduction cascade and melanogenic pathway.
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Molecular analysis of the amphioxus frontal eye unravels the evolutionary origin of the retina and pigment cells of the vertebrate eye
Pavel Vopalensky,Jiri Pergner,Michaela Liegertová,Èlia Benito-Gutiérrez,Detlev Arendt,Zbynek Kozmik +5 more
TL;DR: The cell types of the amphioxus frontal eye molecularly are characterized and it is shown that the cells of the frontal eye specifically coexpress a combination of transcription factors and opsins typical of the vertebrate eye photoreceptors and an inhibitory Gi-type alpha subunit of the G protein, indicating an off-responding phototransductory cascade.
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Eye evolution: common use and independent recruitment of genetic components.
Pavel Vopalensky,Zbynek Kozmik +1 more
TL;DR: Analysis of particular genetic and biochemical components shows that many evolutionary processes have participated in eye evolution, and the direct regulation of essential photoreceptor genes by these factors suggests that this regulatory relationship might have been already established in the ancestral Photoreceptor cell.
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Melatonin Signaling Controls Circadian Swimming Behavior in Marine Zooplankton
TL;DR: This work finds that melatonin is produced in brain photoreceptors with a vertebrate-type opsin-based phototransduction cascade and a light-entrained clock and proposes thatMelatonin signaling plays a role in the circadian control of ciliary swimming to adjust the vertical position of zooplankton in response to ambient light.