S
Shuichi Wada
Researcher at Tokyo Metropolitan University
Publications - 29
Citations - 3363
Shuichi Wada is an academic researcher from Tokyo Metropolitan University. The author has contributed to research in topics: Ciona intestinalis & Notochord. The author has an hindex of 19, co-authored 28 publications receiving 3268 citations. Previous affiliations of Shuichi Wada include Kyoto University & Nagahama Institute of Bio-Science and Technology.
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Journal ArticleDOI
The draft genome of Ciona intestinalis : insights into chordate and vertebrate origins
Paramvir S. Dehal,Yutaka Satou,Robert K. Campbell,Jarrod Chapman,Bernard M. Degnan,Anthony W. De Tomaso,Brad Davidson,Anna Di Gregorio,Maarten D. Sollewijn Gelpke,David Goodstein,Naoe Harafuji,Kenneth E. M. Hastings,Isaac Ho,Kohji Hotta,Wayne Huang,Takeshi Kawashima,Patrick Lemaire,Diego Martinez,Ian A. Meinertzhagen,Simona Necula,Masaru Nonaka,Nik Putnam,Sam Rash,Hidetoshi Saiga,Masanobu Satake,Astrid Terry,Lixy Yamada,Hong Gang Wang,Satoko Awazu,Kaoru Azumi,Jeffrey L. Boore,Margherita Branno,Stephen T. Chin-Bow,Rosaria DeSantis,Sharon A. Doyle,Pilar Francino,David N. Keys,David N. Keys,Shinobu Haga,Hiroko Hayashi,Kyosuke Hino,Kaoru S. Imai,Kazuo Inaba,Shungo Kano,Shungo Kano,Kenji Kobayashi,Mari Kobayashi,Byung In Lee,Kazuhiro W. Makabe,Chitra Manohar,Giorgio Matassi,Mónica Medina,Yasuaki Mochizuki,Steve Mount,Tomomi Morishita,Sachiko Miura,Akie Nakayama,Satoko Nishizaka,Hisayo Nomoto,Fumiko Ohta,Kazuko Oishi,Isidore Rigoutsos,Masako Sano,Akane Sasaki,Yasunori Sasakura,Eiichi Shoguchi,Tadasu Shin-I,Antoinetta Spagnuolo,Didier Y.R. Stainier,Miho Suzuki,Olivier Tassy,Naohito Takatori,Miki Tokuoka,Kasumi Yagi,Fumiko Yoshizaki,Shuichi Wada,Cindy Zhang,P. Douglas Hyatt,Frank W. Larimer,Chris Detter,Norman A. Doggett,Tijana Glavina,Trevor Hawkins,Paul G. Richardson,Susan Lucas,Yuji Kohara,Michael Levine,Nori Satoh,Daniel S. Rokhsar,Daniel S. Rokhsar +89 more
TL;DR: A draft of the protein-coding portion of the genome of the most studied ascidian, Ciona intestinalis, is generated, suggesting that ascidians contain the basic ancestral complement of genes involved in cell signaling and development.
Journal ArticleDOI
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
Linda Z. Holland,Ricard Albalat,Kaoru Azumi,Èlia Benito-Gutiérrez,Matthew J. Blow,Marianne Bronner-Fraser,Frédéric Brunet,Thomas Butts,Simona Candiani,Larry J. Dishaw,Larry J. Dishaw,David E. K. Ferrier,David E. K. Ferrier,Jordi Garcia-Fernàndez,Jeremy J. Gibson-Brown,Carmela Gissi,Adam Godzik,Finn Hallböök,Dan Hirose,Kazuyoshi Hosomichi,Tetsuro Ikuta,Hidetoshi Inoko,Masanori Kasahara,Jun Kasamatsu,Takeshi Kawashima,Takeshi Kawashima,Ayuko Kimura,Masaaki Kobayashi,Zbynek Kozmik,Kaoru Kubokawa,Vincent Laudet,Gary W. Litman,Gary W. Litman,Alice C. McHardy,Alice C. McHardy,Daniel Meulemans,Masaru Nonaka,Robert Piotr Olinski,Zeev Pancer,Len A. Pennacchio,Mario Pestarino,Jonathan P. Rast,Isidore Rigoutsos,Marc Robinson-Rechavi,Graeme J. Roch,Hidetoshi Saiga,Yasunori Sasakura,Masanobu Satake,Yutaka Satou,Michael Schubert,Nancy M. Sherwood,Takashi Shiina,Naohito Takatori,Naohito Takatori,Javier Tello,Pavel Vopalensky,Shuichi Wada,Anlong Xu,Yuzhen Ye,Keita Yoshida,Fumiko Yoshizaki,Jr-Kai Yu,Qing Zhang,Christian M. Zmasek,Pieter J. de Jong,Kazutoyo Osoegawa,Nicholas H. Putnam,Daniel S. Rokhsar,Daniel S. Rokhsar,Noriyuki Satoh,Noriyuki Satoh,Peter W. H. Holland +71 more
TL;DR: The results indicate that the amphioxus genome is elemental to an understanding of the biology and evolution of nonchordate deuterostomes, invertebrate chordates, and vertebrates.
Journal ArticleDOI
A genomewide survey of developmentally relevant genes in Ciona intestinalis. II. Genes for homeobox transcription factors.
Shuichi Wada,Miki Tokuoka,Eiichi Shoguchi,Kenji Kobayashi,Anna Di Gregorio,Antonietta Spagnuolo,Margherita Branno,Yuji Kohara,Daniel S. Rokhsar,Michael Levine,Hidetoshi Saiga,Nori Satoh,Yutaka Satou +12 more
TL;DR: The draft genome sequence and cDNA/EST database of the basal chordate Ciona intestinalis are searched to reveal the repertoire of homeodomain-containing transcription factors in the Ciona genome, which will be useful for future research on the development and evolution of chordates.
Journal ArticleDOI
Spatially and temporally regulated expression of the LIM class homeobox gene Hrlim suggests multiple distinct functions in development of the ascidian, Halocynthia roretzi
TL;DR: It is suggested that Hrlim plays multiple distinct roles in ascidian embryogenesis, particularly in certain lineages that give rise to subsets of cells in the brain and spinal cord.
Journal ArticleDOI
Hroth, an orthodenticle-related homeobox gene of the ascidian, Halocynthia roretzi: its expression and putative roles in the axis formation during embryogenesis
TL;DR: It was revealed that Hroth is expressed in both involuting mesoendoderm and anterior ectoderm during gastrulation while later expression is restricted to the sensory vesicle and anterior epidermis.