T
Thomas Butts
Researcher at University of Liverpool
Publications - 29
Citations - 5266
Thomas Butts is an academic researcher from University of Liverpool. The author has contributed to research in topics: Granule cell & Cerebellum. The author has an hindex of 16, co-authored 29 publications receiving 4851 citations. Previous affiliations of Thomas Butts include University of Oxford & King's College London.
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Journal ArticleDOI
The amphioxus genome and the evolution of the chordate karyotype
Nicholas H. Putnam,Thomas Butts,David E. K. Ferrier,Rebecca F. Furlong,Uffe Hellsten,Takeshi Kawashima,Takeshi Kawashima,Marc Robinson-Rechavi,Marc Robinson-Rechavi,Eiichi Shoguchi,Eiichi Shoguchi,Astrid Terry,Jr-Kai Yu,E grave,lia Benito-Gutiérrez,Inna Dubchak,Jordi Garcia-Fernàndez,Jeremy J. Gibson-Brown,Igor V. Grigoriev,Amy C. Horton,Pieter J. de Jong,Jerzy Jurka,Vladimir V. Kapitonov,Yuji Kohara,Yoko Kuroki,Erika Lindquist,Susan Lucas,Kazutoyo Osoegawa,Len A. Pennacchio,Asaf Salamov,Yutaka Satou,Tatjana Sauka-Spengler,Jeremy Schmutz,Tadasu Shin-I,Atsushi Toyoda,Marianne Bronner-Fraser,Asao Fujiyama,Linda Z. Holland,Peter W. H. Holland,Nori Satoh,Nori Satoh,Daniel S. Rokhsar,Daniel S. Rokhsar +42 more
TL;DR: Whole-genome comparisons illuminate the murky relationships among the three chordate groups (tunicates, lancelets and vertebrates), and allow not only reconstruction of the gene complement of the last common chordate ancestor but also partial reconstruction of its genomic organization.
Journal ArticleDOI
Genome Sequence of the Pea Aphid Acyrthosiphon pisum
Stephen Richards,Richard A. Gibbs,Nicole M. Gerardo,Nancy A. Moran,Atsushi Nakabachi,David L. Stern,Denis Tagu,Alex C.C. Wilson,Donna M. Muzny,Christie Kovar,Andy Cree,Joseph Chacko,Mimi N. Chandrabose,Marvin Diep Dao,Huyen Dinh,Ramatu Ayiesha Gabisi,Sandra Hines,Jennifer Hume,Shalini N. Jhangian,Vandita Joshi,Lora Lewis,Yih Shin Liu,John Lopez,Margaret Morgan,Ngoc Nguyen,Geoffrey Okwuonu,San Juana Ruiz,Jireh Santibanez,Rita A. Wright,Gerald R. Fowler,Matthew Hitchens,Ryan J. Lozado,Charles Moen,David Steffen,James T. Warren,Jingkun Zhang,Lynne V. Nazareth,Dean Chavez,Clay Davis,Sandra L. Lee,Bella Mayurkumar Patel,Ling Ling Pu,Stephanie Bell,Angela Jolivet Johnson,Selina Vattathil,Rex Lee Williams,Shuji Shigenobu,Shuji Shigenobu,Phat M. Dang,Mizue Morioka,Takema Fukatsu,Toshiaki Kudo,Shin-ya Miyagishima,Huaiyang Jiang,Kim C. Worley,Fabrice Legeai,Jean-Pierre Gauthier,Olivier Collin,Lan Zhang,Hsiu Chuan Chen,Olga Ermolaeva,Wratko Hlavina,Yuri Kapustin,Boris Kiryutin,Paul Kitts,Donna Maglott,Terence Murphy,Kim D. Pruitt,Victor Sapojnikov,Alexandre Souvorov,Françoise Thibaud-Nissen,Francisco Câmara,Roderic Guigó,Mario Stanke,Victor V. Solovyev,Peter Kosarev,Don Gilbert,Toni Gabaldón,Jaime Huerta-Cepas,Marina Marcet-Houben,Miguel Pignatelli,Andrés Moya,Claude Rispe,Morgane Ollivier,Hadi Quesneville,Emmanuelle Permal,Carlos Llorens,Ricardo Futami,Dale Hedges,Hugh M. Robertson,Tyler Alioto,Marco Mariotti,Naruo Nikoh,John P. McCutcheon,Gaelen R. Burke,Alexandra Kamins,Amparo Latorre,Peter D. Ashton,Federica Calevro,Hubert Charles,Stefano Colella,Angela E. Douglas,Georg Jander,Derek H. Jones,Gérard Febvay,Lars G. Kamphuis,Philip F. Kushlan,Sandy J. Macdonald,John S Ramsey,Julia Schwartz,Stuart Seah,Gavin H. Thomas,Augusto F. Vellozo,Augusto F. Vellozo,Bodil N. Cass,Patrick H. Degnan,Bonnie L. Hurwitz,Teresa E. Leonardo,Ryuichi Koga,Boran Altincicek,Caroline Anselme,Hagop S. Atamian,Seth M. Barribeau,Martin De Vos,Elizabeth J. Duncan,Jay D. Evans,Murad Ghanim,Abdelaziz Heddi,Isgouhi Kaloshian,Carole Vincent-Monégat,Ben J. Parker,Vicente Pérez-Brocal,Vicente Pérez-Brocal,Yvan Rahbé,Chelsea J. Spragg,Javier Tamames,Daniel Tamarit,Cecilia Tamborindeguy,Andreas Vilcinskas,Ryan D. Bickel,Jennifer A. Brisson,Thomas Butts,Chun-che Chang,Olivier Christiaens,Gregory K. Davis,Elizabeth Duncan,David E. K. Ferrier,Masatoshi Iga,Ralf Janssen,Hsiao-ling Lu,Alistair P. McGregor,Toru Miura,Guy Smagghe,James M Smith,Maurijn van der Zee,Rodrigo A. Velarde,Megan J. Wilson,Peter K. Dearden,Owain R. Edwards,Owain R. Edwards,Karl H.J. Gordon,Roland Hilgarth,Stanley Dean Rider,Dayalan G. Srinivasan,Tom Walsh,Asano Ishikawa,Stéphanie Jaubert-Possamai,Brian Fenton,Wenting Huang,Guillaume Rizk,Dominique Lavenier,Jacques Nicolas,Carole M. Smadja,Jing-Jiang Zhou,Filipe G. Vieira,Xiao Li He,Renhu Liu,Julio Rozas,Linda M. Field,Peter M. Campbell,James C. Carolan,Carol I. J. Fitzroy,Karen T. Reardon,Gerald R. Reeck,Gerald R. Reeck,Karam B. Singh,T. L. Wilkinson,Jurgen Huybrechts,Mohatmed Abdel-latief,Alain Robichon,Jan A. Veenstra,Frank Hauser,Giuseppe Cazzamali,Martina Schneider,Michael Williamson,Elisabeth Stafflinger,Karina K. Hansen,Cornelis J. P. Grimmelikhuijzen,Daniel R. G. Price,Marina C. Caillaud,Eric Van Fleet,Qinghu Ren,John A. Gatehouse,Véronique Brault,Baptiste Monsion,Jason Diaz,Laura Hunnicutt,Ho Jong Ju,Ximo Pechuan,José Aguilar,Teresa Cortes,Benjamín Ortiz-Rivas,David Martínez-Torres,Aviv Dombrovsky,Richard Dale,T.G. Emyr Davies,Martin S. Williamson,Andrew K. Jones,David B. Sattelle,Sally M. Williamson,Adrian J. Wolstenholme,Ludovic Cottret,David G. Heckel,Wayne B. Hunter +223 more
TL;DR: The genome of the pea aphid shows remarkable levels of gene duplication and equally remarkable gene absences that shed light on aspects of aphid biology, most especially its symbiosis with Buchnera.
Journal ArticleDOI
The genome of the model beetle and pest Tribolium castaneum.
Stephen Richards,Richard A. Gibbs,George M. Weinstock,Susan J. Brown,Robin Denell,Richard W. Beeman,R. A. Gibbs,Gregor Bucher,Markus Friedrich,Cornelis J. P. Grimmelikhuijzen,Martin Klingler,Marcé D. Lorenzen,Siegfried Roth,Reinhard Schröder,Diethard Tautz,Evgeny M. Zdobnov,Donna M. Muzny,Tony Attaway,Stephanie Bell,Christian J. Buhay,Mimi N. Chandrabose,Dean Chavez,Kerstin P. Clerk-Blankenburg,Andrew Cree,Marvin Diep Dao,Clay Davis,Joseph Chacko,Huyen Dinh,Shannon Dugan-Rocha,Gerald R. Fowler,Toni T. Garner,Jeffrey Garnes,Andreas Gnirke,Alica Hawes,Judith Hernandez,Sandra Hines,Michael Holder,Jennifer Hume,Shalini N. Jhangiani,Vandita Joshi,Ziad Khan,LaRonda Jackson,Christie Kovar,Andrea Kowis,Sandra L. Lee,Lora Lewis,Jon Margolis,Margaret Morgan,Lynne V. Nazareth,Ngoc Nguyen,Geoffrey Okwuonu,David A. Parker,San Juana Ruiz,Jireh Santibanez,Joël Savard,Steven E. Scherer,Brian W. Schneider,Erica Sodergren,Selina Vattahil,Donna Villasana,Courtney Sherell White,Rita A. Wright,Yoonseong Park,Jeff Lord,Brenda Oppert,Susan J Brown,Liangjiang Wang,George Weinstock,Yue Liu,Kim C. Worley,Christine G. Elsik,Justin T. Reese,Eran Elhaik,Giddy Landan,Dan Graur,Peter Arensburger,Peter W. Atkinson,Jim Beidler,Jeffery P. Demuth,Douglas W. Drury,Yu Zhou Du,Haruhiko Fujiwara,Vincenza Maselli,Mizuko Osanai,Hugh M. Robertson,Zhijian Tu,Jianjun Wang,Suzhi Wang,Henry Song,Lan Zhang,Doreen Werner,Mario Stanke,Burkhard Morgenstern,Victor V. Solovyev,Peter Kosarev,Garth Brown,Hsiu Chuan Chen,Olga Ermolaeva,Wratko Hlavina,Yuri Kapustin,Boris Kiryutin,Paul Kitts,Donna Maglott,Kim D. Pruitt,Victor Sapojnikov,Alexandre Souvorov,Aaron J. Mackey,Robert M. Waterhouse,Stefan Wyder,Evgenia V. Kriventseva,Tatsuhiko Kadowaki,Peer Bork,Manuel Aranda,Riyue Bao,Anke Beermann,Nicola Berns,Renata Bolognesi,François Bonneton,Daniel Bopp,Thomas Butts,Arnaud Chaumot,Robin E. Denell,David E. K. Ferrier,Cassondra M. Gordon,Marek Jindra,Que Lan,H. Michael G. Lattorff,Vincent Laudet,Cornelia Von Levetsow,Zhenyi Liu,Rebekka Lutz,Jeremy A. Lynch,Rodrigo Nunes da Fonseca,Nico Posnien,Rolf Reuter,Johannes B. Schinko,Christian Schmitt,Michael Schoppmeier,Teresa D. Shippy,Franck Simonnet,Henrique Marques-Souza,Yoshinori Tomoyasu,Jochen Trauner,Maurijn van der Zee,Michel Vervoort,Nadine Wittkopp,Ernst A. Wimmer,Xiaoyun Yang,Andrew K. Jones,David B. Sattelle,Paul R. Ebert,David R. Nelson,Jeffrey G. Scott,Subbaratnam Muthukrishnan,Karl J. Kramer,Yasuyuki Arakane,Qingsong Zhu,David G. Hogenkamp,Radhika Dixit,Haobo Jiang,Zhen Zou,Jeremy L. Marshall,Elena N. Elpidina,K.S. Vinokurov,Cris Oppert,Jay D. Evans,Zhiqiang Lu,Picheng Zhao,Niranji Sumathipala,Boran Altincicek,Andreas Vilcinskas,Michael Williams,Dan Hultmark,Charles Hetru,Frank Hauser,Giuseppe Cazzamali,Michael Williamson,Bin Li,Yoshiaki Tanaka,Reinhard Predel,Susanne Neupert,Joachim Schachtner,Peter Verleyen,Florian Raible,Kimberly K. O. Walden,Sergio Angeli,Sylvain Forêt,Stefan Schuetz,Ryszard Maleszka,Sherry Miller,Daniela Grossmann +190 more
TL;DR: Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products.
Journal ArticleDOI
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
Linda Z. Holland,Ricard Albalat,Kaoru Azumi,Èlia Benito-Gutiérrez,Matthew J. Blow,Marianne Bronner-Fraser,Frédéric Brunet,Thomas Butts,Simona Candiani,Larry J. Dishaw,Larry J. Dishaw,David E. K. Ferrier,David E. K. Ferrier,Jordi Garcia-Fernàndez,Jeremy J. Gibson-Brown,Carmela Gissi,Adam Godzik,Finn Hallböök,Dan Hirose,Kazuyoshi Hosomichi,Tetsuro Ikuta,Hidetoshi Inoko,Masanori Kasahara,Jun Kasamatsu,Takeshi Kawashima,Takeshi Kawashima,Ayuko Kimura,Masaaki Kobayashi,Zbynek Kozmik,Kaoru Kubokawa,Vincent Laudet,Gary W. Litman,Gary W. Litman,Alice C. McHardy,Alice C. McHardy,Daniel Meulemans,Masaru Nonaka,Robert Piotr Olinski,Zeev Pancer,Len A. Pennacchio,Mario Pestarino,Jonathan P. Rast,Isidore Rigoutsos,Marc Robinson-Rechavi,Graeme J. Roch,Hidetoshi Saiga,Yasunori Sasakura,Masanobu Satake,Yutaka Satou,Michael Schubert,Nancy M. Sherwood,Takashi Shiina,Naohito Takatori,Naohito Takatori,Javier Tello,Pavel Vopalensky,Shuichi Wada,Anlong Xu,Yuzhen Ye,Keita Yoshida,Fumiko Yoshizaki,Jr-Kai Yu,Qing Zhang,Christian M. Zmasek,Pieter J. de Jong,Kazutoyo Osoegawa,Nicholas H. Putnam,Daniel S. Rokhsar,Daniel S. Rokhsar,Noriyuki Satoh,Noriyuki Satoh,Peter W. H. Holland +71 more
TL;DR: The results indicate that the amphioxus genome is elemental to an understanding of the biology and evolution of nonchordate deuterostomes, invertebrate chordates, and vertebrates.
Journal ArticleDOI
Development of the cerebellum: simple steps to make a ‘little brain’
TL;DR: Three distinct aspects of cerebellar development are explored – allocation of the Cerebellar anlage, the significance of transit amplification and the generation of neuronal diversity – each defined by distinct regulatory mechanisms and each with special significance for health and disease.