R
Ramunas Stepanauskas
Researcher at Bigelow Laboratory For Ocean Sciences
Publications - 158
Citations - 17527
Ramunas Stepanauskas is an academic researcher from Bigelow Laboratory For Ocean Sciences. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 59, co-authored 146 publications receiving 14297 citations. Previous affiliations of Ramunas Stepanauskas include University of Georgia & Lund University.
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Journal ArticleDOI
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke,Patrick Schwientek,Alexander Sczyrba,Alexander Sczyrba,Natalia Ivanova,Iain Anderson,Jan Fang Cheng,Aaron E. Darling,Aaron E. Darling,Stephanie Malfatti,Brandon K. Swan,Esther A. Gies,Jeremy A. Dodsworth,Brian P. Hedlund,Georgios Tsiamis,Stefan M. Sievert,Wen Tso Liu,Jonathan A. Eisen,Steven J. Hallam,Nikos C. Kyrpides,Ramunas Stepanauskas,Edward M. Rubin,Philip Hugenholtz,Tanja Woyke +23 more
TL;DR: This study applies single-cell genomics to target and sequence 201 archaeal and bacterial cells from nine diverse habitats belonging to 29 major mostly uncharted branches of the tree of life and provides a systematic step towards a better understanding of biological evolution on the authors' planet.
Journal ArticleDOI
Co-selection of antibiotic and metal resistance.
TL;DR: Metal contamination represents a long-standing, widespread and recalcitrant selection pressure with both environmental and clinical importance that potentially contributes to the maintenance and spread of antibiotic resistance factors.
Journal ArticleDOI
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers,Nikos C. Kyrpides,Ramunas Stepanauskas,Miranda Harmon-Smith,Devin F. R. Doud,T. B. K. Reddy,Frederik Schulz,Jessica K. Jarett,Adam R. Rivers,Adam R. Rivers,Emiley A. Eloe-Fadrosh,Susannah G. Tringe,Susannah G. Tringe,Natalia Ivanova,Alex Copeland,Alicia Clum,Eric D. Becraft,Rex R. Malmstrom,Bruce W. Birren,Mircea Podar,Peer Bork,George M. Weinstock,George M. Garrity,Jeremy A. Dodsworth,Shibu Yooseph,Granger G. Sutton,Frank Oliver Gloeckner,Jack A. Gilbert,William C. Nelson,Steven J. Hallam,Sean P. Jungbluth,Sean P. Jungbluth,Thijs J. G. Ettema,Scott Tighe,Konstantinos T. Konstantinidis,Wen Tso Liu,Brett J. Baker,Thomas Rattei,Jonathan A. Eisen,Brian P. Hedlund,Katherine D. McMahon,Noah Fierer,Rob Knight,Robert D. Finn,Guy Cochrane,Ilene Karsch-Mizrachi,Gene W. Tyson,Christian Rinke,Alla Lapidus,Folker Meyer,Pelin Yilmaz,Donovan H. Parks,A. M. Eren,Lynn M. Schriml,Jillian F. Banfield,Philip Hugenholtz,Tanja Woyke +56 more
TL;DR: Two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences are presented, including the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum information about a Metagenome-Assembled Genomes (MIMAG), including estimates of genome completeness and contamination.
Journal ArticleDOI
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
Sergey Nurk,Anton Bankevich,Dmitry Antipov,Alexey Gurevich,Anton Korobeynikov,Alla Lapidus,Andrey D. Prjibelski,Alex Pyshkin,Alexander Sirotkin,Yakov Sirotkin,Ramunas Stepanauskas,Scott Clingenpeel,Tanja Woyke,Jeffrey S. McLean,Roger S. Lasken,Glenn Tesler,Max A. Alekseyev,Pavel A. Pevzner +17 more
TL;DR: Applications of the single-cell assembler SPAdes to a new approach for capturing and sequencing "microbial dark matter" that forms small pools of randomly selected single cells and further sequences all genomes from the mini-metagenome at once.
Book ChapterDOI
Assembling genomes and mini-metagenomes from highly chimeric reads
Sergey Nurk,Anton Bankevich,Dmitry Antipov,Alexey Gurevich,Anton Korobeynikov,Alla Lapidus,Andrey Prjibelsky,Alexey V. Pyshkin,Alexander Sirotkin,Yakov Sirotkin,Ramunas Stepanauskas,Jeffrey S. McLean,Roger S. Lasken,Scott Clingenpeel,Tanja Woyke,Glenn Tesler,Max A. Alekseyev,Pavel A. Pevzner +17 more
TL;DR: Applications of the single-cell assembler SPAdes to a new approach for capturing and sequencing "dark matter of life" that forms small pools of randomly selected single cells and further sequences all genomes from the mini-metagenome at once.