S
Sajeet Haridas
Researcher at United States Department of Energy
Publications - 52
Citations - 3536
Sajeet Haridas is an academic researcher from United States Department of Energy. The author has contributed to research in topics: Genome & Biology. The author has an hindex of 21, co-authored 39 publications receiving 2688 citations. Previous affiliations of Sajeet Haridas include University of British Columbia & Lawrence Berkeley National Laboratory.
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Journal ArticleDOI
MycoCosm portal: gearing up for 1000 fungal genomes
Igor V. Grigoriev,Roman Nikitin,Sajeet Haridas,Alan Kuo,Robin A. Ohm,Robert Otillar,Robert Riley,Asaf Salamov,Xueling Zhao,Frank Korzeniewski,Tatyana Smirnova,Henrik P. Nordberg,Inna Dubchak,Igor Shabalov +13 more
TL;DR: MycoCosm is a fungal genomics portal developed by the US Department of Energy Joint Genome Institute to support integration, analysis and dissemination of fungal genome sequences and other 'omics' data by providing interactive web-based tools.
Journal ArticleDOI
Comparative genomics of biotechnologically important yeasts
Robert Riley,Sajeet Haridas,Kenneth H. Wolfe,Mariana R. Lopes,Chris Todd Hittinger,Markus Göker,Asaf Salamov,Jennifer H. Wisecaver,Tanya M Long,Christopher H. Calvey,Andrea Aerts,Kerrie Barry,Cindy Choi,Alicia Clum,Aisling Y. Coughlan,Shweta Deshpande,Alexander P Douglass,Sara J Hanson,Hans-Peter Klenk,Kurt LaButti,Alla Lapidus,Erika Lindquist,Anna Lipzen,Jan P. Meier-Kolthoff,Robin A. Ohm,Robert Otillar,Jasmyn Pangilinan,Yi Peng,Antonis Rokas,Carlos A. Rosa,Carmen Scheuner,Andriy A. Sibirny,Jason C. Slot,J. Benjamin Stielow,Hui Sun,Cletus P. Kurtzman,Meredith Blackwell,Igor V. Grigoriev,Thomas W. Jeffries +38 more
TL;DR: The comparative genome analysis of 29 taxonomically and biotechnologically important yeasts, including 16 newly sequenced, enables correlation of genes to useful metabolic properties and showed the synteny of the mating-type locus to be conserved over a billion years of evolution.
Journal ArticleDOI
Widespread adenine N6-methylation of active genes in fungi
Stephen J. Mondo,Richard O Dannebaum,Rita C. Kuo,Katherine B. Louie,Adam J. Bewick,Kurt LaButti,Sajeet Haridas,Alan Kuo,Asaf Salamov,Steven R. Ahrendt,Steven R. Ahrendt,Rebecca Lau,Benjamin P. Bowen,Anna Lipzen,William Sullivan,Bill Andreopoulos,Alicia Clum,Erika Lindquist,Christopher Daum,Trent R. Northen,Govindarajan Kunde-Ramamoorthy,Robert J. Schmitz,Andrii P. Gryganskyi,David E. Culley,Jon K. Magnuson,Timothy Y. James,Michelle A. O’Malley,Jason E. Stajich,Joseph W. Spatafora,Axel Visel,Axel Visel,Igor V. Grigoriev,Igor V. Grigoriev +32 more
TL;DR: Using single-molecule long-read sequencing of 16 diverse fungal genomes, it is observed that up to 2.8% of all adenines were methylated in early-diverging fungi, far exceeding levels observed in other eukaryotes and more derived fungi.
Journal ArticleDOI
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen
Scott DiGuistini,Ye Wang,Nancy Y. Liao,Greg Taylor,Philippe Tanguay,Nicolas Feau,Bernard Henrissat,Simon K. Chan,Uljana Hesse-Orce,Sepideh Massoumi Alamouti,Clement K. M. Tsui,Roderick T. Docking,Anthony Levasseur,Sajeet Haridas,Gordon Robertson,Inanc Birol,Robert A. Holt,Marco A. Marra,Richard C. Hamelin,Martin Hirst,Steven J.M. Jones,Jörg Bohlmann,Colette Breuil +22 more
TL;DR: It is established that Gc is heterothallic, and evidence for repeat-induced point mutation is reported, and insights are reported into how Gc tolerates conifer-defense chemicals, including oleoresin terpenoids, as they colonize a host tree.
Journal ArticleDOI
Megaphylogeny resolves global patterns of mushroom evolution
Torda Varga,Krisztina Krizsán,Csenge Földi,Bálint Dima,Marisol Sánchez-García,Santiago Sánchez-Ramírez,Gergely J. Szöllősi,János Gergő Szarkándi,Viktor Papp,László Albert,William Andreopoulos,Claudio Angelini,Vladimír Antonín,Kerrie Barry,Neale L. Bougher,Peter K. Buchanan,Bart Buyck,Viktória Bense,Pam Catcheside,Mansi Chovatia,Jerry A. Cooper,Wolfgang Dämon,Dennis E. Desjardin,Péter Finy,József Geml,Sajeet Haridas,Karen W. Hughes,Alfredo Justo,Dariusz Karasiński,Ivona Kautmanová,Brigitta Kiss,Sándor Kocsubé,Heikki Kotiranta,Kurt LaButti,Bernardo Ernesto Lechner,Kare Liimatainen,Anna Lipzen,Zoltán Lukács,Sirma Mihaltcheva,Louis N. Morgado,Louis N. Morgado,Tuula Niskanen,Machiel E. Noordeloos,Robin A. Ohm,Beatriz Ortiz-Santana,Clark L. Ovrebo,Nikolett Rácz,Robert Riley,Anton Savchenko,Anton Savchenko,Anton Shiryaev,Karl Soop,Viacheslav Spirin,Csilla Szebenyi,Michal Tomšovský,Rodham E. Tulloss,Jessie K. Uehling,Igor V. Grigoriev,Igor V. Grigoriev,Csaba Vágvölgyi,Tamás Papp,Francis Martin,Otto Miettinen,David S. Hibbett,László Nagy +64 more
TL;DR: A phylogenetic tree of 5,284 fungal species is used to infer ages and broad patterns of speciation/extinction, diversification and morphological innovation in mushroom-forming fungi.