R
Rhoda Kinsella
Researcher at European Bioinformatics Institute
Publications - 6
Citations - 2506
Rhoda Kinsella is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Ensembl & Ensembl Genomes. The author has an hindex of 6, co-authored 6 publications receiving 2163 citations. Previous affiliations of Rhoda Kinsella include Wellcome Trust Sanger Institute.
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Journal ArticleDOI
Ensembl BioMarts: a hub for data retrieval across taxonomic space
Rhoda Kinsella,Andreas Kähäri,Syed Haider,Jorge Zamora,Glenn Proctor,Giulietta Spudich,Jeff Almeida-King,Daniel M. Staines,Paul S. Derwent,Arnaud Kerhornou,Paul J. Kersey,Paul Flicek +11 more
TL;DR: This article aims to give a comprehensive overview of the Ensembl and Ensemble Genomes BioMarts as well as some useful examples and a description of current data content and future objectives.
Journal ArticleDOI
The BioMart community portal: an innovative alternative to large, centralized data repositories
Damian Smedley,Syed Haider,Steffen Durinck,Luca Pandini,Paolo Provero,Paolo Provero,James E. Allen,Olivier Arnaiz,Mohammad Awedh,Richard Baldock,Giulia Barbiera,Philippe Bardou,Tim Beck,Andrew Blake,Merideth Bonierbale,Anthony J. Brookes,Gabriele Bucci,Iwan Buetti,Sarah W. Burge,Cédric Cabau,Joseph W. Carlson,Claude Chelala,Charalambos Chrysostomou,Davide Cittaro,Olivier Collin,Raul Cordova,Rosalind J. Cutts,Erik Dassi,Alex Di Genova,Anis Djari,Anthony Esposito,Heather Estrella,Eduardo Eyras,Eduardo Eyras,Julio Fernandez-Banet,Simon A. Forbes,Robert C. Free,Takatomo Fujisawa,Emanuela Gadaleta,Jose Manuel Garcia-Manteiga,David Goodstein,Kristian Gray,José Afonso Guerra-Assunção,Bernard Haggarty,Dong Jin Han,Byung Woo Han,Todd W. Harris,Jayson Harshbarger,Robert K. Hastings,Richard D. Hayes,Claire Hoede,Shen Hu,Zhi-Liang Hu,Lucie N. Hutchins,Zhengyan Kan,Hideya Kawaji,Aminah Keliet,Arnaud Kerhornou,Sunghoon Kim,Rhoda Kinsella,Christophe Klopp,Lei Kong,Daniel Lawson,Dejan Lazarevic,Ji Hyun Lee,Thomas Letellier,Chuan-Yun Li,Pietro Liò,Chu Jun Liu,Jie Luo,Alejandro Maass,Jérôme Mariette,Thomas Maurel,Stefania Merella,Azza M. Mohamed,François Moreews,Ibounyamine Nabihoudine,Nelson Ndegwa,Céline Noirot,Cristian Perez-Llamas,Michael Primig,Alessandro Quattrone,Hadi Quesneville,Davide Rambaldi,James M. Reecy,Michela Riba,Steven Rosanoff,Amna A. Saddiq,Elisa Salas,Olivier Sallou,Rebecca Shepherd,Reinhard Simon,Linda Sperling,William Spooner,Daniel M. Staines,Delphine Steinbach,Kevin R. Stone,Elia Stupka,Jon W. Teague,Abu Z. Dayem Ullah,Jun Wang,Doreen Ware,Marie Wong-Erasmus,Ken Youens-Clark,Amonida Zadissa,Shi Jian Zhang,Arek Kasprzyk,Arek Kasprzyk +107 more
TL;DR: The latest version of the BioMart Community Portal comes with many new databases that have been created by the ever-growing community and comes with better support and extensibility for data analysis and visualization tools.
Journal ArticleDOI
Ensembl’s 10th year
Paul Flicek,Bronwen Aken,Benoit Ballester,Kathryn Beal,Eugene Bragin,Simon Brent,Yuan Chen,Peter Clapham,Guy Coates,Susan Fairley,Stephen Fitzgerald,Julio Fernandez-Banet,Leo Gordon,Stefan Gräf,Syed Haider,Martin Hammond,Kerstin Howe,Andrew M. Jenkinson,Nathan Johnson,Andreas Kähäri,Damian Keefe,Stephen Keenan,Rhoda Kinsella,Felix Kokocinski,Gautier Koscielny,Eugene Kulesha,Daniel Lawson,Ian Longden,Tim Massingham,William M. McLaren,Karyn Megy,Bert Overduin,Bethan Pritchard,Daniel Rios,Magali Ruffier,Michael Schuster,Guy Slater,Damian Smedley,Giulietta Spudich,Y. Amy Tang,Stephen J. Trevanion,Albert J. Vilella,Jan Hinnerk Vogel,Simon D. M. White,Steven P. Wilder,Amonida Zadissa,Ewan Birney,Fiona Cunningham,Ian Dunham,Richard Durbin,Xosé M. Fernández-Suárez,Javier Herrero,Tim Hubbard,Anne Parker,Glenn Proctor,James Smith,Stephen M. J. Searle +56 more
TL;DR: Major additions and improvements to Ensembl since the previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensemblembl regulatory features and continued development of the software infrastructure.
Journal ArticleDOI
BioMart Central Portal: an open database network for the biological community
Jonathan M. Guberman,J. Ai,Olivier Arnaiz,Joachim Baran,Andrew Blake,Richard Baldock,Claude Chelala,David Croft,Anthony Cros,Rosalind J. Cutts,A. Di Génova,Simon A. Forbes,Takatomo Fujisawa,Emanuela Gadaleta,David Goodstein,David Goodstein,Gunes Gundem,Bernard Haggarty,Syed Haider,Matthew Hall,Todd W. Harris,Robin Haw,Shen Hu,Simon J. Hubbard,Jack Hsu,Vivek Iyer,Philip Jones,Toshiaki Katayama,Rhoda Kinsella,Lei Kong,Daniel Lawson,Yong Liang,Nuria Lopez-Bigas,Jie Luo,Michael Lush,Jeremy Mason,François Moreews,Nelson Ndegwa,Darren J. Oakley,Christian Perez-Llamas,Michael Primig,Elena Rivkin,S. Rosanoff,Rebecca Shepherd,Reinhard Simon,B. Skarnes,Damian Smedley,Linda Sperling,William Spooner,Peter Stevenson,Kevin R. Stone,Jon W. Teague,Jun Wang,Jianxin Wang,Brett R Whitty,D. T. Wong,Marie Wong-Erasmus,L. Yao,Ken Youens-Clark,Christina K. Yung,Junjun Zhang,Arek Kasprzyk +61 more
TL;DR: The structure of Central Portal is described and example queries are shown to demonstrate its capabilities, with a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying.
Journal ArticleDOI
Ensembl Genomes: Extending Ensembl across the taxonomic space
Paul J. Kersey,Daniel Lawson,Ewan Birney,Paul S. Derwent,Matthias Haimel,Javier Herrero,Stephen Keenan,Arnaud Kerhornou,Gautier Koscielny,Andreas Kähäri,Rhoda Kinsella,Eugene Kulesha,Uma Maheswari,Karyn Megy,Michael Nuhn,Glenn Proctor,Daniel M. Staines,Franck Valentin,Albert J. Vilella,Andrew D. Yates +19 more
TL;DR: Ensembl Genomes is a new portal offering integrated access to genome-scale data from non-vertebrate species of scientific interest, developed using the Ensembl genome annotation and visualisation platform.