T
Todd W. Harris
Researcher at Ontario Institute for Cancer Research
Publications - 14
Citations - 2491
Todd W. Harris is an academic researcher from Ontario Institute for Cancer Research. The author has contributed to research in topics: WormBase & WormBook. The author has an hindex of 12, co-authored 14 publications receiving 2149 citations. Previous affiliations of Todd W. Harris include Washington University in St. Louis.
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Journal ArticleDOI
The BioMart community portal: an innovative alternative to large, centralized data repositories
Damian Smedley,Syed Haider,Steffen Durinck,Luca Pandini,Paolo Provero,Paolo Provero,James E. Allen,Olivier Arnaiz,Mohammad Awedh,Richard Baldock,Giulia Barbiera,Philippe Bardou,Tim Beck,Andrew Blake,Merideth Bonierbale,Anthony J. Brookes,Gabriele Bucci,Iwan Buetti,Sarah W. Burge,Cédric Cabau,Joseph W. Carlson,Claude Chelala,Charalambos Chrysostomou,Davide Cittaro,Olivier Collin,Raul Cordova,Rosalind J. Cutts,Erik Dassi,Alex Di Genova,Anis Djari,Anthony Esposito,Heather Estrella,Eduardo Eyras,Eduardo Eyras,Julio Fernandez-Banet,Simon A. Forbes,Robert C. Free,Takatomo Fujisawa,Emanuela Gadaleta,Jose Manuel Garcia-Manteiga,David Goodstein,Kristian Gray,José Afonso Guerra-Assunção,Bernard Haggarty,Dong Jin Han,Byung Woo Han,Todd W. Harris,Jayson Harshbarger,Robert K. Hastings,Richard D. Hayes,Claire Hoede,Shen Hu,Zhi-Liang Hu,Lucie N. Hutchins,Zhengyan Kan,Hideya Kawaji,Aminah Keliet,Arnaud Kerhornou,Sunghoon Kim,Rhoda Kinsella,Christophe Klopp,Lei Kong,Daniel Lawson,Dejan Lazarevic,Ji Hyun Lee,Thomas Letellier,Chuan-Yun Li,Pietro Liò,Chu Jun Liu,Jie Luo,Alejandro Maass,Jérôme Mariette,Thomas Maurel,Stefania Merella,Azza M. Mohamed,François Moreews,Ibounyamine Nabihoudine,Nelson Ndegwa,Céline Noirot,Cristian Perez-Llamas,Michael Primig,Alessandro Quattrone,Hadi Quesneville,Davide Rambaldi,James M. Reecy,Michela Riba,Steven Rosanoff,Amna A. Saddiq,Elisa Salas,Olivier Sallou,Rebecca Shepherd,Reinhard Simon,Linda Sperling,William Spooner,Daniel M. Staines,Delphine Steinbach,Kevin R. Stone,Elia Stupka,Jon W. Teague,Abu Z. Dayem Ullah,Jun Wang,Doreen Ware,Marie Wong-Erasmus,Ken Youens-Clark,Amonida Zadissa,Shi Jian Zhang,Arek Kasprzyk,Arek Kasprzyk +107 more
TL;DR: The latest version of the BioMart Community Portal comes with many new databases that have been created by the ever-growing community and comes with better support and extensibility for data analysis and visualization tools.
Journal ArticleDOI
WormBase: a comprehensive resource for nematode research
Todd W. Harris,Igor Antoshechkin,Tamberlyn Bieri,Darin Blasiar,Juancarlos Chan,Wen J. Chen,Norie De La Cruz,Paul H. Davis,Margaret Duesbury,Ruihua Fang,Jolene Fernandes,Michael Han,Ranjana Kishore,Raymond Lee,Hans-Michael Müller,Cecilia Nakamura,Philip Ozersky,Andrei Petcherski,Arun Rangarajan,Anthony Rogers,Gary Schindelman,Erich M. Schwarz,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Karen Yook,Richard Durbin,Lincoln Stein,John Spieth,Paul W. Sternberg +31 more
TL;DR: New species and data types now available at WormBase are described and enhancements to the curatorial pipeline and website infrastructure are detail to accommodate new genomes and an extensive user base.
Journal ArticleDOI
WormBase 2016: expanding to enable helminth genomic research
Kevin L. Howe,Bruce J. Bolt,Scott Cain,Juancarlos Chan,Wen J. Chen,Paul Davis,James Done,Thomas A. Down,Sibyl Gao,Christian A. Grove,Todd W. Harris,Ranjana Kishore,Raymond Lee,Jane Lomax,Yuling Li,Hans-Michael Müller,Cecilia Nakamura,Paulo A. S. Nuin,Michael Paulini,Daniela Raciti,Gary Schindelman,Eleanor J Stanley,Mary Ann Tuli,Kimberly Van Auken,Daniel Wang,Xiaodong Wang,Gary Williams,Adam Wright,Karen Yook,Matthew Berriman,Paul J. Kersey,Tim Schedl,Lincoln Stein,Paul W. Sternberg +33 more
TL;DR: WormBase (www.wormbase.org) is a central repository for research data on the biology, genetics and genomics of Caenorhabditis elegans and other nematodes, and has made a number of improvements to its main website, including new tools for browsing genomic features and ontology annotations.
Journal ArticleDOI
Ascaris suum draft genome
Aaron R. Jex,Shiping Liu,Bo Li,Neil D. Young,Ross S. Hall,Yingrui Li,Linfeng Yang,Na Zeng,Xun Xu,Zijun Xiong,Fangyuan Chen,Xuan Wu,Guojie Zhang,Xiaodong Fang,Yi Kang,Garry A. Anderson,Todd W. Harris,Bronwyn E. Campbell,Johnny Vlaminck,Tao Wang,Cinzia Cantacessi,Erich M. Schwarz,Shoba Ranganathan,Peter Geldhof,Peter Nejsum,Paul W. Sternberg,Huanming Yang,Jun Wang,Jing Wang,Robin B. Gasser +29 more
TL;DR: This genome provides a comprehensive resource to the scientific community and underpins the development of new and urgently needed interventions (drugs, vaccines and diagnostic tests) against ascariasis and other nematodiases.
Journal ArticleDOI
WormBase: a modern Model Organism Information Resource.
Todd W. Harris,Valerio Arnaboldi,Scott Cain,Juancarlos Chan,Wen J. Chen,Jaehyoung Cho,Paul Davis,Sibyl Gao,Christian A. Grove,Ranjana Kishore,Raymond Lee,Hans-Michael Müller,Cecilia Nakamura,Paulo A. S. Nuin,Michael Paulini,Daniela Raciti,Faye H. Rodgers,Matthew Russell,Gary Schindelman,Kimberly Van Auken,Qinghua Wang,Gary Williams,Adam Wright,Karen Yook,Kevin L. Howe,Tim Schedl,Lincoln Stein,Paul W. Sternberg +27 more
TL;DR: This update discusses the status of literature curation and recently added data, detail new features of the web interface and options for users wishing to conduct data mining workflows, and discusses the efforts to build a robust and scalable architecture by leveraging commercial cloud offerings.