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Shuang Yong Xu
Researcher at New England Biolabs
Publications - 10
Citations - 918
Shuang Yong Xu is an academic researcher from New England Biolabs. The author has contributed to research in topics: Restriction enzyme & DNA. The author has an hindex of 8, co-authored 10 publications receiving 846 citations. Previous affiliations of Shuang Yong Xu include Icahn School of Medicine at Mount Sinai.
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Journal ArticleDOI
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
Richard J. Roberts,Marlene Belfort,Timothy H. Bestor,Ashok S. Bhagwat,Thomas A. Bickle,Jurate Bitinaite,Robert Blumenthal,Sergey Kh. Degtyarev,David T. F. Dryden,Kevin Dybvig,Keith Firman,Elizaveta S. Gromova,Richard I. Gumport,Stephen E. Halford,Stanley Hattman,Joseph Heitman,David P. Hornby,Arvydas Janulaitis,Albert Jeltsch,Jytte Josephsen,Antal Kiss,Todd R. Klaenhammer,Ichizo Kobayashi,Huimin Kong,Detlev H. Krüger,Sanford A. Lacks,Martin G. Marinus,Michiko Miyahara,Richard D. Morgan,Noreen E. Murray,Valakunja Nagaraja,Andrzej Piekarowicz,Alfred Pingoud,Elisabeth A. Raleigh,Desirazu N. Rao,Norbert O. Reich,Repin Vladimir E,Eric U. Selker,Pang-Chui Shaw,Daniel C. Stein,Barry L. Stoddard,Waclaw Szybalski,Thomas A. Trautner,James L. Van Etten,Jorge M. B. Vítor,Geoffrey G. Wilson,Shuang Yong Xu +46 more
TL;DR: In this article, a nomenclature for restriction endonucleases, DNA methyltransferases, homing endon nucleases and related genes and gene products is described.
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Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I
TL;DR: The structure of a Type III R–M system, consisting of the entire EcoP15I complex (Mod2Res1) bound to DNA, is reported, which suggests how ATP hydrolysis is coupled to long-range diffusion of a helicase on DNA, and how a dimeric methyltransferase functions to methylate only one of the two DNA strands.
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Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification
TL;DR: The cloning and expression of the CviPII DNA nicking and modification system encoded by chlorella virus NYs-1 is described and can be used to generate single-stranded DNAs for isothermal strand-displacement amplification.
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Natural zinc ribbon HNH endonucleases and engineered zinc finger nicking endonuclease
Shuang Yong Xu,Yogesh K. Gupta +1 more
TL;DR: The identification of a large pool of previously unknown natural NEases and engineered NEases provides more ‘tools’ for DNA manipulation and molecular diagnostics and the small modular HNH nicking domain can be used to generate rare NEases applicable to targeted genome editing.
Journal ArticleDOI
Structure Determination and Biochemical Characterization of a Putative HNH Endonuclease from Geobacter metallireducens GS-15
Shuang Yong Xu,Alexandre P. Kuzin,Jayaraman Seetharaman,Alice Gutjahr,Siu-Hong Chan,Yang Chen,Rong Xiao,Thomas Acton,Gaetano T. Montelione,Liang Tong +9 more
TL;DR: The crystal structure of a putative HNH endonuclease, Gmet_0936 protein from Geobacter metallireducens GS-15, has been determined at 2.6 Å resolution using single-wavelength anomalous dispersion method, and shows a weak DNA binding activity in a DNA mobility shift assay and a weak Mn2+-dependent nicking activity on supercoiled plasmids in low pH buffers.