Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

다중혈관 관상동맥 환자에서 y-문합을 이용하여 양쪽 내흉동맥만을 사용한 우회술의 조기 성적

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

[신간의 별자리x] 우리/미술, 그리고 ‘슬픔의 박물관’

Although gold is the subject of one of the most ancient themes of investigation in science, its renaissance now leads to an exponentially increasing number of publications, especially in the context of emerging nanoscience and nanotechnology with nanoparticles and self-assembled monolayers (SAMs). We will limit the present review to gold nanoparticles (AuNPs), also called gold colloids. AuNPs are the most stable metal nanoparticles, and they present fascinating aspects such as their assembly of multiple types involving materials science, the behavior of the individual particles, size-related electronic, magnetic and optical properties (quantum size effect), and their applications to catalysis and biology. Their promises are in these fields as well as in the bottom-up approach of nanotechnology, and they will be key materials and building block in the 21st century. Whereas the extraction of gold started in the 5th millennium B.C. near Varna (Bulgaria) and reached 10 tons per year in Egypt around 1200-1300 B.C. when the marvelous statue of Touthankamon was constructed, it is probable that “soluble” gold appeared around the 5th or 4th century B.C. in Egypt and China. In antiquity, materials were used in an ecological sense for both aesthetic and curative purposes. Colloidal gold was used to make ruby glass 293 Chem. Rev. 2004, 104, 293−346

Gold nanoparticles: assembly, supramolecular chemistry, quantum-size-related properties, and applications toward biology, catalysis, and nanotechnology.

A triphasic catalytic system (Pt/TiO2–SiO2) with an “islands in the sea” configuration was fabricated by controlling the selectivity of SiO2 deposition onto the surface of TiO2 versus the surface of Pt nanoparticles. The Pt surface was exposed, while the nanoparticles were supported on TiO2 and isolated from each other by SiO2 to achieve both significantly improved sinter resistance up to 700 °C and outstanding activity after high-temperature calcination. This work not only demonstrates the feasibility of using a new triphasic system with uncovered catalyst to maximize the thermal stability and catalytic activity but also offers a general approach to the synthesis of high-performance catalytic systems with tunable compositions.

A Sinter-Resistant Catalytic System Fabricated by Maneuvering the Selectivity of SiO2 Deposition onto the TiO2 Surface versus the Pt Nanoparticle Surface

Photonic Crystals That Can Be Addressed with an External Magnetic Field

This letter reports an electrocatalytic study of electrospun anatase nanofibers decorated with Pt catalysts in the form of nanoparticles or nanowires. We decorated the surface of nanofibers with Pt through a polyol process, in which nanoparticles of 2−5 nm in size were formed with different densities depending on the reaction time. By adding Fe(III) ions to the polyol process, we also obtained Pt nanowires of ∼7 nm in diameter and up to 125 nm in length. We then studied the effects of both the coverage and morphology of the Pt nanostructures on the methanol oxidation reaction. Nanofibers with a submonolayer of Pt nanoparticles were found to display improved catalytic durability over commercial Pt/C as determined by chronoamperometry owing to a synergistic effect of the underlying anatase surface and the Pt nanostructures with well-defined facets. Improvement in catalytic activity and durability were also observed for Pt nanowires, indicating that the additional catalytic facets on the nanowires can enhanc...

Direct Oxidation of Methanol on Pt Nanostructures Supported on Electrospun Nanofibers of Anatase

Microcontact printing with a cylindrical rolling stamp: A practical step toward automatic manufacturing of patterns with submicrometer-sized features†

Recent advances in microfabrication have allowed one to pattern the surface of a solid substrate with patches of different wettabilities on the micrometer-sized scale. These textured surfaces provide a well-characterized model system for studying the wetting and dewetting behaviors of liquids on heterogeneous surfaces. They also present a well-defined template to direct the self-organization of liquids on the surfaces of solid substrates, and to form patterned microstructures of various materials without using expensive, clean-room facilities. As demonstrated in a number of studies, the three-dimensional morphologies of the liquid microstructures could be easily controlled by changing the two-dimensional features patterned on the surface of a solid substrate. These demonstrations suggest that microfabrication based on surface patterning and selective wetting or dewetting will offer immediate advantages in applications such as fabrication of microreactor arrays and microfluidic devices, where a liquid (or solution) is the primary material to be patterned.

Younan Xia

Papers

A Sinter-Resistant Catalytic System Fabricated by Maneuvering the Selectivity of SiO2 Deposition onto the TiO2 Surface versus the Pt Nanoparticle Surface

Photonic Crystals That Can Be Addressed with an External Magnetic Field

Direct Oxidation of Methanol on Pt Nanostructures Supported on Electrospun Nanofibers of Anatase

Microcontact printing with a cylindrical rolling stamp: A practical step toward automatic manufacturing of patterns with submicrometer-sized features†

Surface patterning and its application in wetting/dewetting studies