Institut national de la recherche agronomique

About: Institut national de la recherche agronomique is a facility organization based out in Rabat, Morocco. It is known for research contribution in the topics: Population & Gene. The organization has 41515 authors who have published 68362 publications receiving 3292057 citations. The organization is also known as: INRA & Inra.

The use of terrestrial LiDAR technology in forest science: application fields, benefits and challenges

Abstract: The use of terrestrial LiDAR (light detection and ranging) scanners in forest environments is being studied extensively at present due to the high potential of this technology to acquire three-dimensional data on standing trees rapidly and accurately This article aims to establish the state-of-the-art in this emerging area Terrestrial LiDAR has been applied to forest inventory measurements (plot cartography, species recognition, diameter at breast height, tree height, stem density, basal area and plot-level wood volume estimates) and canopy characterisation (virtual projections, gap fraction and three-dimensional foliage distribution) These techniques have been extended to stand value and wood quality assessment Terrestrial LiDAR also provides new support for ecological applications such as the assessment of the physical properties of leaves, transpiration processes and microhabitat diversity Since 2003, both the capabilities of the devices and data processing technology have improved significantly, with encouraging results Nevertheless, measurement patterns and device specifications must be selected carefully according to the objectives of the study Moreover, automated and reliable programmes are still required to process data to make these methodologies applicable specifically to the forest sciences and to fill the gap between time-consuming manual methods and wide-scale remote sensing such as airborne LiDAR scanning

Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay

Abstract: The classification of Brucella into species and biovars relies on phenotypic characteristics and sometimes raises difficulties in the interpretation of the results due to an absence of standardization of the typing reagents. In addition, the resolution of this biotyping is moderate and requires the manipulation of the living agent. More efficient DNA-based methods are needed, and this work explores the suitability of multiple locus variable number tandem repeats analysis (MLVA) for both typing and species identification. Eighty tandem repeat loci predicted to be polymorphic by genome sequence analysis of three available Brucella genome sequences were tested for polymorphism by genotyping 21 Brucella strains (18 reference strains representing the six 'classical' species and all biovars as well as 3 marine mammal strains currently recognized as members of two new species). The MLVA data efficiently cluster the strains as expected according to their species and biovar. For practical use, a subset of 15 loci preserving this clustering was selected and applied to the typing of 236 isolates. Using this MLVA-15 assay, the clusters generated correspond to the classical biotyping scheme of Brucella spp. The 15 markers have been divided into two groups, one comprising 8 user-friendly minisatellite markers with a good species identification capability (panel 1) and another complementary group of 7 microsatellite markers with higher discriminatory power (panel 2). The MLVA-15 assay can be applied to large collections of Brucella strains with automated or manual procedures, and can be proposed as a complement, or even a substitute, of classical biotyping methods. This is facilitated by the fact that MLVA is based on non-infectious material (DNA) whereas the biotyping procedure itself requires the manipulation of the living agent. The data produced can be queried on a dedicated MLVA web service site.

Drought-Induced Effects on Nitrate Reductase Activity and mRNA and on the Coordination of Nitrogen and Carbon Metabolism in Maize Leaves

Abstract: Maize ( Zea mays L.) plants were grown to the nine-leaf stage. Despite a saturating N supply, the youngest mature leaves (seventh position on the stem) contained little NO 3 − reserve. Droughted plants (deprived of nutrient solution) showed changes in foliar enzyme activities, mRNA accumulation, photosynthesis, and carbohydrate and amino acid contents. Total leaf water potential and CO 2 assimilation rates, measured 3 h into the photoperiod, decreased 3 d after the onset of drought. Starch, glucose, fructose, and amino acids, but not sucrose (Suc), accumulated in the leaves of droughted plants. Maximal extractable phospho enol pyruvate carboxylase activities increased slightly during water deficit, whereas the sensitivity of this enzyme to the inhibitor malate decreased. Maximal extractable Suc phosphate synthase activities decreased as a result of water stress, and there was an increase in the sensitivity to the inhibitor orthophosphate. A correlation between maximal extractable foliar nitrate reductase (NR) activity and the rate of CO 2 assimilation was observed. The NR activation state and maximal extractable NR activity declined rapidly in response to drought. Photosynthesis and NR activity recovered rapidly when nutrient solution was restored at this point. The decrease in maximal extractable NR activity was accompanied by a decrease in NR transcripts, whereas Suc phosphate synthase and phospho enol pyruvate carboxylase mRNAs were much less affected. The coordination of N and C metabolism is retained during drought conditions via modulation of the activities of Suc phosphate synthase and NR commensurate with the prevailing rate of photosynthesis.

Climate Relicts: Past, Present, Future

Abstract: Populations left behind during climate-driven range shifts can persist in enclaves of benign environmental conditions within an inhospitable regional climate. Such climate relicts exist in numerous plant and animal species worldwide, yet our knowledge of them is fragmented and lacks a general framework. Here we synthesize the empirical evidence considering (a) relict habitats, (b) abiotic and biotic constraints on population dynamics, (c) mechanisms promoting population persistence, and (d ) uncertainties concerning their future prospects. We identify three major types of climate relicts: (a) those constrained primarily by climate-driven abiotic factors, (b )t hose restricted to areas that are inaccessible to antagonistic species for climatic reasons, and (c) those requiring a host or mutualistic species that is itself limited by climate. Understanding the formation and functioning of climate relicts is essential for their conservation and for our understanding of the response of species and populations to climate change.

Genomic analysis of the terpenoid synthase ( AtTPS) gene family of Arabidopsis thaliana.

Abstract: A family of 40 terpenoid synthase genes (AtTPS) was discovered by genome sequence analysis in Arabidopsis thaliana. This is the largest and most diverse group of TPS genes currently known for any species. AtTPS genes cluster into five phylogenetic subfamilies of the plant TPS superfamily. Surprisingly, thirty AtTPS closely resemble, in all aspects of gene architecture, sequence relatedness and phylogenetic placement, the genes for plant monoterpene synthases, sesquiterpene synthases or diterpene synthases of secondary metabolism. Rapid evolution of these AtTPS resulted from repeated gene duplication and sequence divergence with minor changes in gene architecture. In contrast, only two AtTPS genes have known functions in basic (primary) metabolism, namely gibberellin biosynthesis. This striking difference in rates of gene diversification in primary and secondary metabolism is relevant for an understanding of the evolution of terpenoid natural product diversity. Eight AtTPS genes are interrupted and are likely to be inactive pseudogenes. The localization of AtTPS genes on all five chromosomes reflects the dynamics of the Arabidopsis genome; however, several AtTPS genes are clustered and organized in tandem repeats. Furthermore, some AtTPS genes are localized with prenyltransferase genes (AtGGPPS, geranylgeranyl diphosphate synthase) in contiguous genomic clusters encoding consecutive steps in terpenoid biosynthesis. The clustered organization may have implications for TPS gene evolution and the evolution of pathway segments for the synthesis of terpenoid natural products. Phylogenetic analyses highlight events in the divergence of the TPS paralogs and suggest orthologous genes and a model for the evolution of the TPS gene family.