Showing papers by "University of Palermo published in 2004"

Comparison of Different Primer Sets for Use in Automated Ribosomal Intergenic Spacer Analysis of Complex Bacterial Communities

Abstract: ITSF and ITSReub, constituting a new primer set designed for the amplification of the 16S-23S rRNA intergenic transcribed spacers, have been compared with primer sets consisting of 1406F and 23Sr (M. M. Fisher and E. W. Triplett, Appl. Environ. Microbiol. 65:4630-4636, 1999) and S-D-Bact-1522-b-S-20 and L-D-Bact-132-a-A-18 (L. Ranjard et al., Appl. Environ. Microbiol. 67:4479-4487, 2001), previously proposed for automated ribosomal intergenic spacer analysis (ARISA) of complex bacterial communities. An agricultural soil and a polluted soil, maize silage, goat milk, a small marble sample from the facade of the Certosa of Pavia (Pavia, Italy), and brine from a deep hypersaline anoxic basin in the Mediterranean Sea were analyzed with the three primer sets. The number of peaks in the ARISA profiles, the range of peak size (width of the profile), and the reproducibility of results were used as indices to evaluate the efficiency of the three primer sets. The overall data showed that ITSF and ITSReub generated the most informative (in term of peak number) and reproducible profiles and yielded a wider range of spacer sizes (134 to 1,387) than the other primer sets, which were limited in detecting long fragments. The minimum amount of DNA template and sensitivity in detection of minor DNA populations were evaluated with artificial mixtures of defined bacterial species. ITSF and ITSReub amplified all the bacteria at DNA template concentrations from 280 to 0.14 ng μl−1, while the other primer sets failed to detect the spacers of one or more bacterial strains. Although the primer set consisting of ITSF and ITSReub and that of S-D-Bact-1522-b-S-20 and L-D-Bact-132-a-A-18 showed similar sensitivities for the DNA of Allorhizobium undicula mixed with the DNA of other species, the S-D-Bact-1522-b-S-20 and L-D-Bact-132-a-A-18 primer set failed to detect the DNA of Pseudomonas stutzeri.

Networks of equities in financial markets

Abstract: We review the recent approach of correlation based networks of financial equities. We investigate portfolio of stocks at different time horizons, financial indices and volatility time series and we show that meaningful economic information can be extracted from noise dressed correlation matrices. We show that the method can be used to falsify widespread market models by directly comparing the topological properties of networks of real and artificial markets.

Efficacy and tolerability of anti-immunoglobulin E therapy with omalizumab in patients with concomitant allergic asthma and persistent allergic rhinitis: SOLAR.

Abstract: Background: Anti-IgE therapy could be particularly beneficial for patients with concomitant disease as it targets a common factor in both diseases. The aim of this study was to evaluate the efficacy and safety of omalizumab in patients with concomitant moderate-to-severe asthma and persistent allergic rhinitis. Methods: This multicentre, randomized, double-blind, parallel-group, placebocontrolled trial evaluated the safety and efficacy of omalizumab. A total of 405 patients (12–74 years) with a stable treatment (‡ 400 lg budesonide Turbuhaler � )a nd‡ 2 unscheduled medical visits for asthma during the past year or ‡ 3 during the past 2 years were enrolled. Patients received omalizumab (‡ 0.016 mg/kg/IgE [IU/ml] per 4 weeks) or placebo for 28 weeks. Results: Fewer patients treated with omalizumab experienced asthma exacerbations (20.6%) than placebo-treated patients (30.1%), P ¼ 0.02. A clinically significant (‡ 1.0 point) improvement in both Asthma Quality of Life Questionnaire and Rhinitis Quality of Life Questionnaire occurred in 57.7% of omalizumab patients compared with 40.6% of placebo patients (P < 0.001). Omalizumab reduced Wasserfallen symptom scores for asthma (P ¼ 0.023), rhinitis (P < 0.001) and the composite asthma/rhinitis scores (P < 0.001) compared with placebo. Serious adverse events were observed in 1.4% of omalizumab-treated patients and 1.5% of placebo-treated patients. Conclusion: Omalizumab is well tolerated and effective in preventing asthma exacerbations and improving quality of life in patients with concomitant asthma and persistent allergic rhinitis.

Attachment and spreading of fibroblasts on an RGD peptide-modified injectable hyaluronan hydrogel.

Abstract: Hyaluronan (HA) hydrogels resist attachment and spreading of fibroblasts and most other mammalian cell types. A thiol-modified HA (3,3'-dithiobis(propanoic dihydrazide) [HA-DTPH]) was modified with peptides containing the Arg-Gly-Asp (RGD) sequence and then crosslinked with polyethylene glycol (PEG) diacrylate (PEGDA) to create a biomaterial that supported cell attachment, spreading, and proliferation. The hydrogels were evaluated in vitro and in vivo in three assay systems. First, the behavior of human and murine fibroblasts on the surface of the hydrogels was evaluated. The concentration and structure of the RGD peptides and the length of the PEG spacer influenced cell attachment and spreading. Second, murine fibroblasts were seeded into HA-DTPH solutions and encapsulated via in situ crosslinking with or without bound RGD peptides. Cells remained viable and proliferated within the hydrogel for 15 days in vitro. Although the RGD peptides significantly enhanced cell proliferation on the hydrogel surface, the cell proliferation inside the hydrogel in vitro was increased only modestly. Third, HA-DTPH/PEGDA/peptide hydrogels were evaluated as injectable tissue engineering materials in vivo. A suspension of murine fibroblasts in HA-DTPH was crosslinked using PEGDA plus PEGDA peptide, and the viscous, gelling mixture was injected subcutaneously into the flanks of nude mice; gels formed in vivo following injection. After 4 weeks, growth of new fibrous tissue had been accelerated by the sense RGD peptides. Thus, attachment, spreading, and proliferation of cells is dramatically enhanced on RGD-modified surfaces but only modestly accelerated in vivo tissue formation.

The Relationship between Risk-Taking, Sensation-Seeking, and the Tourist Behavior of Young Adults: A Cross-Cultural Study

Abstract: This study analyzed the effects of the combined psychological characteristics of risk-taking and sensation seeking on the travel behavior and preferred tourist activities of young adults on leisure trips. The results of this cross-cultural study, which was conducted among 1,429 students at 11 universities located in 11 different countries, found that respondents with high combined risk-taking and sensation seeking (RSS) scores differed significantly in their travel behavior, mode of destination choice, preferred tourist activities and demographics, from those who had low RSS scores. The study also discovered a significant difference between nationalities on RSS scores.

Effectiveness of stirrups and steel fibres as shear reinforcement

Abstract: This paper presents the results of experimental tests carried out on rectangular simply supported beams made of hooked steel fibre reinforced concrete with and without stirrups, subjected to two-point symmetrically placed vertical loads. The tests, carried out with controlled displacements, allow one to record complete load–deflection curves by means of which it is possible to deduce information on dissipative capacity and ductile behaviour up to failure. Depending on the amount of transverse reinforcement, volume fraction of fibres added in the mix and shear span, the collapse mechanism is due to predominant shear or flexure, thus showing the influence of the aforementioned structural parameters on the load carrying capacity and the post-peak behaviour of the beam. In particular, the results show that the inclusion of fibres in adequate percentage can change the brittle mode of failure characterizing shear collapse into a ductile flexural mechanism, confirming the possibility of achieving analogous performance by using reinforcing fibres instead of increasing the amount of transverse reinforcement. The ultimate values of the shear stresses recorded experimentally are compared with the corresponding values deduced by semiempirical expressions available in the literature and the correlation is satisfactory.

Single-File Diffusion of Colloids in One-Dimensional Channels

Abstract: We study the diffusive behavior of colloidal particles which are confined to one-dimensional channels generated by scanning optical tweezers. At long times t, the mean-square displacement is found to scale as t(1/2), which is expected for systems where single-file diffusion occurs. In addition, we experimentally obtain the long-time, self-diffusive behavior from the short-time collective density fluctuations of the system as suggested by a recent analytical approach [Phys. Rev. Lett. 90, 180602 (2003)].

Insect oviposition induces volatile emission in herbaceous plants that attracts egg parasitoids

Abstract: The egg parasitoid Trissolcus basalis (Wollaston) (Hymenoptera: Scelionidae) responded to synomones emitted by leguminous plants induced by feeding and oviposition activity of the bug Nezara viridula (L.) (Heteroptera: Pentatomidae). This was shown by laboratory bioassays using a Y-tube olfactometer. Broad bean leaves ( Vicia faba L.) damaged by feeding activity of N. viridula and on which host egg mass had been laid produced synomones that attracted T. basalis. By contrast, undamaged leaves or feeding-damaged leaves without eggs did not attract wasp females. French bean plants ( Phaseolus vulgaris L.) also emitted attractive synomones when they were damaged by host feeding and carrying egg masses. Thus, release of feeding- and oviposition-induced synomones does not seem to be plant-specific. Synomone production was shown to be a systemically induced plant physiological response to feeding damage and oviposition. Also, parts of the plant that were left undamaged and did not carry host eggs emitted attractive synomones when other parts of the plant were damaged by feeding and carrying eggs. Furthermore, wasps were not attracted by N. viridula egg masses offered alone or combined with damaged broad bean leaves. Thus, the attractiveness of feeding-damaged leaves carrying eggs is due to induction by feeding and oviposition rather than due to a combined effect of attractive volatiles released from eggs and damaged leaves. The production of synomones was influenced by the age of the host egg mass, because feeding-damaged leaves bearing egg masses attracted the parasitoid until the eggs were ∼72-96 h old but not once the larvae had hatched from the eggs (∼120 h old). These results show that annual plants are able to produce synomones as a consequence of feeding and egg mass oviposition by a sucking insect.

Photocatalytic degradation of dyes by using a membrane reactor

Abstract: Dyes are organic compounds used in textile, food and drug industries, and their abatement represents one of the main problems in the treatment processes because generally they are very stable toxic compounds. In this work, two commercial azo-dyes, i.e. Congo Red (C32H22N6Na2O6S2) and Patent Blue (C27H31N2NaO6S2), in aqueous solution were degraded in a photocatalytic membrane reactor by using TiO2 Degussa P25 as the catalyst. Different system configurations and irradiating sources were studied, and the influence of some operational parameters such as the pressure in the membrane cell and the initial concentration of the substrates was determined. A comparison between suspended and entrapped TiO2 was also done. The experimental results showed a satisfactory degradation efficiency of the photocatalytic membrane process. The influence of various parameters (e.g. feed concentration, recirculation rate) has been discussed to obtain high reaction rates, operating stability and high membrane rejection, both for substrates and by-products. Congo Red was photodegraded with higher rate under the same experimental conditions probably due to its higher adsorption onto the catalyst surface. It was possible to treat successfully highly concentrated solutions (500 mg/L) of both dyes by means of a continuous process obtaining good values of permeate fluxes (30–70 L/m2 h); this could be interesting for industrial applications. The reactor containing the suspended photocatalyst was significantly more efficient than the reactor containing the catalyst entrapped into the membrane.

Aging, longevity, inflammation, and cancer.

Abstract: Cancer rates increase sharply with age in both sexes, and the majority of cases of cancer occur in patients over the age of 65 years. However, the incidence and mortality for cancer level off around 85-90 years of age, followed by a plateau, or even a decline in the last decades of life. Therefore, it seems reasonable to conclude that centenarians are endowed with a peculiar resistance to cancer. Tumor progression is a complex process that depends on interactions between tumor and host cells. One aspect of the host response, the inflammatory response, is of particular interest because it includes the release of proinflammatory cytokines, some of which may promote tumor growth and hence influence survival. Data in the literature reviewed in this paper suggest that some kind of solid tumors are affected by regulatory cytokine genotypes. In particular proinflammatory genotypes characterized by a low IL-10 producer or a high IL-6 producer seem to be associated with a worse clinical outcome. On the other hand, recent evidence has linked IL-10 and IL-6 cytokine polymorphisms to longevity. In fact, those individuals who are genetically predisposed to produce high levels of IL-6 have a reduced capacity to reach the extreme limits of human life, whereas the high IL-10-producer genotype is increased among centenarians. This opposite effect of IL-6 and IL-10 common gene polymorphisms in cancer and longevity is intriguing. These data prompt considerations of the role that antagonistic pleiotropy plays in disease and in longevity. Inflammatory genotypes may be both friends and enemies. In fact, they are an important and necessary part of the normal host responses to pathogens, but the overproduction of inflammatory cytokines might cause immune-inflammatory diseases and eventually death. In fact, our immune system has evolved to control pathogens, so proinflammatory responses are likely to be evolutionarily programmed to resist fatal infections, and a high IL-6 or a low IL-10 production is associated with increased resistance to pathogens. However, decreased level of IL-6 or increased level of IL-10 might better control inflammatory responses and cancer development. These conditions might result in an increased chance of long-life survival in an environment with a reduced antigen (i.e., pathogen) load.

Tethyan magnetostratigraphy from Pizzo Mondello (Sicily) and correlation to the Late Triassic Newark astrochronological polarity time scale

Abstract: We present the magnetostratigraphy and stable isotope stratigraphy from an expanded (~430-m-thick) Upper Triassic marine limestone section at Pizzo Mondello, Sicily, and review published biostratigraphic information that can be used to defi ne the location of the conodont Carnian-Norian and NorianRhaetian boundaries in this section. Pizzo Mondello offers good potential for magnetostratigraphic correlation of marine biostratigraphic and chemostratigraphic data with the continental Newark astrochronological polarity time scale (APTS) for development of an integrated Late Triassic time scale. The relatively stable average values of δ 18 O centered on 0‰ are a strong indication that the Cherty Limestone at Pizzo Mondello suffered very little diagenetic overprinting. The conodont Carnian-Norian boundary is located 12.5 m above a positive shift of δ 13 C. A statistical approach was applied to evaluate various Pizzo Mondello to Newark magnetostratigraphic correlations. Two correlation options have the highest correlation coeffi cients. In option #1, the base of Pizzo Mondello correlates with the middle part of the Newark APTS, whereas in option #2, the base of Pizzo Mondello starts toward the early part of the Newark APTS. We prefer option #2 in which the Carnian-Norian boundary based on conodonts, as well as its closely associated positive δ 13 C shift, correspond to Newark magnetozone E7 at ca. 228‐227 Ma (adopting Newark astrochronology), implying a long Norian with a duration of ~20 m.y., and a Rhaetian of ~6 m.y. duration. These ages are in fact not inconsistent with the few high-quality radiometric dates that are available for Late Triassic time scale calibration. Based on its good exposure, accessibility, stratigraphic thickness and continuity, and multiple chronostratigraphic correlation possibilities, we propose Pizzo Mondello as global stratigraphic section and point for the base of the Norian.

Zymographic detection and clinical correlations of MMP-2 and MMP-9 in breast cancer sera.

Abstract: Matrix metalloproteinases, in particular the gelatinases MMP-2 and MMP-9, have received great attention in recent years as putative tumour markers for clinical applications. The main reason for the observed interest is their easy detection in body fluids. Moreover, recent evidence has shown multiple functions of MMPs, rather than simply degrading ECM, which include the mobilisation of growth factors and processing of surface molecules. Several authors have reported increased levels of MMPs in a number of cancers, but clinical correlations in breast cancer are still fragmentary. Thus, the aim of the present research was to investigate the activity levels of circulating gelatinases in the sera of breast cancer patients by means of zymographic analysis, and correlate data with clinicopathological parameters. In all, 80 patients and 22 healthy volunteers were involved in this study. Sera were obtained prior to surgery. The clinical variables were: grading of tumours, tumour size, lymph node involvement, tumour staging, oestrogen and progesterone receptor levels (76 out of 80 cases), and c-erbB-2 levels (46 cases). The densitometric measures of MMP-2 and MMP-9 activity levels indicated that the average values of both gelatinase activities were significantly higher in breast cancers than in control sera (P<0.0001). In addition, our analysis showed for the first time that elevated activity levels of both gelatinases correlated only with c-erbB-2 overexpression (P=0.0273 for MMP-2 and P=0.0075 for MMP-9). An inverse correlation was observed with regard to oestrogen receptor expression (P=0.0075 for MMP-2 and P=0.0273 for MMP-9). Moreover, a borderline inverse correlation was observed between the activity levels of both enzymes and nuclear grade (P=0.0511 for MMP-2 and P=0.0794 for MMP-9). In conclusion, the present data suggest that serum measures of MMP's activity may have diagnostic value for discriminating subgroups of breast cancer patients and support the hypothesis that ERBB2 amplification and/or overexpression enhance signalling pathways that may lead to increased production of gelatinases in c-erbB-2 positive breast cancers with higher metastatic potentialities.

Project Selection by Constrained Fuzzy AHP

Abstract: The selection of a project among a set of possible alternatives is a difficult task decision makers have to face. Difficulties in selecting a project arise because of the different goals involved and because of the large number of attributes to consider. Our approach is based upon a fuzzy extension of the Analytic Hierarchy Process (AHP). This paper focuses on the constraints that have to be considered within fuzzy AHP in order to take in account all the available information. This study demonstrates that by considering all the information deriving from the constraints better results in terms of certainty and reliability can be achieved.

Surface debris of canal walls after post space preparation in endodontically treated teeth: a scanning electron microscopic study.

Abstract: Purpose To evaluate surface cleanliness of root canal walls along post space after endodontic treatment using 2 different irrigant regimens, obturation techniques, and post space preparation for adhesive bonding. Study design Forty teeth, divided into 4 groups, were instrumented, using Ni-Ti rotary files, irrigated with NaOCl or NaOCl + EDTA and obturated with cold lateral condensation (CLC) or warm vertical condensation (WVC) of gutta-percha. After post space preparation, etching, and washing procedure, canal walls were observed using a scanning electron microscope (SEM). Amount of debris, smear layer, sealer/gutta-percha remnants, and visibility of open tubules were rated. Results Higher amounts of rough debris, large sealer/gutta-percha remnants, thick smear layer, and no visibility of tubule orifices were recorded in all the groups at apical level of post space. At middle and coronal levels areas of clean dentin, alternating with areas covered by thin smear layer, smaller debris, gutta-percha remnants, and orifices of tubules partially or totally occluded by plugs were frequently observed. Conclusions After endodontic treatment, obturation, and post space preparation SEM analysis of canal walls along post space shows large areas (covered by smear layer, debris, and sealer/gutta-percha remnants) not available for adhesive bonding and resin cementation of fiber posts.

Randomized placebo-controlled trial comparing fluticasone aqueous nasal spray in mono-therapy, fluticasone plus cetirizine, fluticasone plus montelukast and cetirizine plus montelukast for seasonal allergic rhinitis.

Abstract: Summary Background Corticosteroids are considered to be particularly effective in reducing nasal congestion and are therefore recommended as first-line treatment in allergic rhinitis patients with moderate to severe and/or persistent symptoms. Objective We compared the clinical efficacy of fluticasone propionate aqueous nasal spray (FPANS) 200mg given once daily, administered in mono-therapy or combined therapy with a H1 receptor antagonist (cetirizine, CTZ) or with a leukotriene antagonist (montelukast, MSK), and the combined therapy of CTZ plus MSK in the treatment of patients affected by allergic rhinitis to Parietaria during natural pollen exposure. In addition, we examined the effect of the treatment on eosinophil counts and eosinophil cationic protein (ECP) in nasal lavage performed at beginning of season, during season and at the end of the season. Methods One hundred patients aged 12-50 years (meanSD 31.8 � 9.6) with a history of moderate to severe Parietaria pollen-induced seasonal allergic rhinitis were selected. A randomized, double-blind, double dummy, placebo (PLA)-controlled, parallel-group study design was used. Patients were treated FPANS 200mg once daily (n 5 20) or with FPANS 200mg once daily, plus CTZ (10 mg) in the morning (n 5 20), or with FPANS 200mg once daily, plus MSK (10 mg) in the evening (n 5 20) or with CTZ (10 mg) in the morning plus MSK in the evening (n 5 20) or matched PLA (n 5 20). Assessment of efficacy was based on scores of daily nasal symptoms and on eosinophil counts and ECP in nasal lavage. Results All treatments showed significant differences (Po0.001) compared with PLA in terms of total symptom, rhinorrhea, sneezing and nasal itching scores. Concerning nasal congestion on waking and daily only the groups treated with FPANS in mono-therapy or in combined therapy showed significant differences compared with PLA. Comparing the group treated with FPANS alone and the groups treated with FPANS plus CTZ, we found significant differences for total symptom score (P 5 0.04) and for nasal itching (P 5 0.003). The comparison between FPANS plus CTZ and FPANS plus MSK showed significant difference for nasal itching (P 5 0.003). Finally, there were significant differences between the group treated with FPANS and the group treated with CTZ plus MSK for total symptom score (P 5 0.009), for nasal congestion on waking (Po0.001) and nasal congestion daily (Po0.001). Also the comparisons between the group treated with FPANS plus CTZ and the group treated with CTZ plus MSK demonstrated significant differences (Po0.001) for total symptom, for nasal congestion on waking and for nasal congestion on daily, for rhinorrhea (P 5 0.04) and for nasal itching (P 5 0.003) scores. Concerning the comparison between the group treated with FPANS plus MSK and the group treated with CTZ plus MSK we found significant differences for total symptom score (P 5 0.005), for nasal congestion on waking (Po0.001) and for nasal congestion on daily (Po0.001). No other differences were observed between the groups. Concerning blood eosinophil counts, significant differences were found between the treatments with FPANS in mono-therapy or in combined therapy with PLA group during and at the end of the season (P 5 0.0003 and Po0.0001, respectively). Concerning eosinophils and ECP in nasal lavage, all treatments showed significant differences (Po0.001) compared with PLA. Besides, there were significant differences (Po0.001) between the groups treated with FPANS alone or in combined therapy and the group treated with CTZ plus MSK.

Noise-enhanced stability in fluctuating metastable states.

Abstract: We derive general equations for the nonlinear relaxation time of Brownian diffusion in randomly switching potential with a sink For piece-wise linear dichotomously fluctuating potential with metastable state, we obtain the exact average lifetime as a function of the potential parameters and the noise intensity Our result is valid for arbitrary white noise intensity and for arbitrary fluctuation rate of the potential We find noise enhanced stability phenomenon in the system investigated: The average lifetime of the metastable state is greater than the time obtained in the absence of additive white noise We obtain the parameter region of the fluctuating potential where the effect can be observed The system investigated also exhibits a maximum of the lifetime as a function of the fluctuation rate of the potential

Comparison of different theory models and basis sets in the calculation of 13C NMR chemical shifts of natural products

Abstract: The influence of the calculation method in mimicking experimental 13C NMR chemical shifts of 15 low-polarity natural products singularly containing 10–20 carbon atoms was investigated by employing different quantum chemistry approaches and basis sets, both in the preliminary geometry optimizations and in the following single-point 13C GIAO calculations of the NMR chemical shifts. The geometries of the involved species were optimized at the PM3, HF, B3LYP and mPW1PW91 levels whereas the 13C NMR parameters were determined at the HF, B3LYP and mPW1PW91 levels. Different combinations of basis sets were also tested. The consistency and efficiency of the considered combinations of geometry optimizations and GIAO 13C NMR calculations were thoroughly checked by the analysis of statistical parameters concerning computed and experimental 13C NMR chemical shift values. Copyright © 2004 John Wiley & Sons, Ltd.

Risk of Parkinson disease in women: Effect of reproductive characteristics

Abstract: Objective: To investigate the association between some fertile life characteristics and Parkinson disease (PD) in women. Methods: Women affected by PD and control subjects were matched one to one by age (±2 years). One hundred thirty-one women with idiopathic PD and 131 matched control subjects were interviewed. Controls were randomly selected from the resident list of the same municipality of residence of cases. All subjects had a Mini-Mental State Examination score of ≥24. Cumulative length of pregnancies, age at menarche, age and type of menopause, and estrogen use before and after menopause were investigated in cases and controls through a structured questionnaire. Models of matched pair univariate analysis and conditional logistic regression analyses were used to calculate adjusted odds ratio (OR), 95% CI, and two-tailed p values for the investigated variables. Results: PD was significantly associated with a fertile life length shorter than 36 years (OR 2.07; 95% CI 1.00 to 4.30) and a cumulative length of pregnancies longer than 30 months (OR 2.19; 95% CI 1.22 to 3.91). An inverse association between PD and surgical menopause (adjusted OR 0.30; 95% CI 0.13 to 0.77) was also found. Conclusions: An association between factors reducing estrogen stimulation during life and PD was found. These results support the hypothesis that endogenous estrogens play a role in the development of PD.