University of Potsdam

About: University of Potsdam is a education organization based out in Potsdam, Germany. It is known for research contribution in the topics: Population & Computer science. The organization has 9629 authors who have published 26740 publications receiving 759745 citations. The organization is also known as: Universität Potsdam.

Menderes Massif (Western Turkey): structural, metamorphic and magmatic evolution – a synthesis

Abstract: The Menderes Massif covers large areas in western Turkey. The better understanding of its tectono-metamorphic history would provide insight for the Alpine evolution of western Turkey and the entire eastern Mediterranean region. This paper summarizes the available literature on the metamorphic rocks of western Turkey and that of the Menderes Massif with special reference and emphasis to the papers presented in the special issue.

The comparison of macroseismic intensity scales

Abstract: The number of different macroseismic scales that have been used to express earthquake shaking in the course of the last 200 years is not known; it may reach three figures. The number of important scales that have been widely adopted is much smaller, perhaps about eight, not counting minor variants. Where data sets exist that are expressed in different scales, it is often necessary to establish some sort of equivalence between them, although best practice would be to reassign intensity values rather than convert them. This is particularly true because difference between workers in assigning intensity is often greater than differences between the scales themselves, particularly in cases where one scale may not be very well defined. The extent to which a scale guides the user to arrive at a correct assessment of the intensity is a measure of the quality of the scale. There are a number of reasons why one should prefer one scale to another for routine use, and some of these tend in different directions. If a scale has many tests (diagnostics) for each degree, it is more likely that the scale can be applied in any case that comes to hand, but if the diagnostics are so numerous that they include ones that do not accurately indicate any one intensity level, then the use of the scale will tend to produce false values. The purpose of this paper is chiefly to discuss in a general way the principles involved in the analysis of intensity scales. Conversions from different scales to the European Macroseismic Scale are discussed.

Identification of a Novel Enzyme Required for Starch Metabolism in Arabidopsis Leaves. The Phosphoglucan, Water Dikinase

Abstract: The phosphorylation of amylopectin by the glucan, water dikinase (GWD; EC 2.7.9.4) is an essential step within starch metabolism. This is indicated by the starch excess phenotype of GWD-deficient plants, such as the sex1-3 mutant of Arabidopsis (Arabidopsis thaliana). To identify starch-related enzymes that rely on glucan-bound phosphate, we studied the binding of proteins extracted from Arabidopsis wild-type leaves to either phosphorylated or nonphosphorylated starch granules. Granules prepared from the sex1-3 mutant were prephosphorylated in vitro using recombinant potato (Solanum tuberosum) GWD. As a control, the unmodified, phosphate free granules were used. An as-yet uncharacterized protein was identified that preferentially binds to the phosphorylated starch. The C-terminal part of this protein exhibits similarity to that of GWD. The novel protein phosphorylates starch granules, but only following prephosphorylation with GWD. The enzyme transfers the β-P of ATP to the phosphoglucan, whereas the γ-P is released as orthophosphate. Therefore, the novel protein is designated as phosphoglucan, water dikinase (PWD). Unlike GWD that phosphorylates preferentially the C6 position of the glucose units, PWD phosphorylates predominantly (or exclusively) the C3 position. Western-blot analysis of protoplast and chloroplast fractions from Arabidopsis leaves reveals a plastidic location of PWD. Binding of PWD to starch granules strongly increases during net starch breakdown. Transgenic Arabidopsis plants in which the expression of PWD was reduced by either RNAi or a T-DNA insertion exhibit a starch excess phenotype. Thus, in Arabidopsis leaves starch turnover requires a close collaboration of PWD and GWD.

A historical review of recurrence plots

Abstract: In the last two decades recurrence plots (RPs)were introduced in many different scientific disciplines. It turned out how powerful this method is. After introducing approaches of quantification of RPs and by the study of relationships between RPs and fundamental properties of dynamical systems, this method attracted even more attention. After 20 years of RPs it is time to summarise this development in a historical context.

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

Abstract: The domestication of the horse ∼5.5 kya and the emergence of mounted riding, chariotry, and cavalry dramatically transformed human civilization. However, the genetics underlying horse domestication are difficult to reconstruct, given the near extinction of wild horses. We therefore sequenced two ancient horse genomes from Taymyr, Russia (at 7.4- and 24.3-fold coverage), both predating the earliest archeological evidence of domestication. We compared these genomes with genomes of domesticated horses and the wild Przewalski’s horse and found genetic structure within Eurasia in the Late Pleistocene, with the ancient population contributing significantly to the genetic variation of domesticated breeds. We furthermore identified a conservative set of 125 potential domestication targets using four complementary scans for genes that have undergone positive selection. One group of genes is involved in muscular and limb development, articular junctions, and the cardiac system, and may represent physiological adaptations to human utilization. A second group consists of genes with cognitive functions, including social behavior, learning capabilities, fear response, and agreeableness, which may have been key for taming horses. We also found that domestication is associated with inbreeding and an excess of deleterious mutations. This genetic load is in line with the “cost of domestication” hypothesis also reported for rice, tomatoes, and dogs, and it is generally attributed to the relaxation of purifying selection resulting from the strong demographic bottlenecks accompanying domestication. Our work demonstrates the power of ancient genomes to reconstruct the complex genetic changes that transformed wild animals into their domesticated forms, and the population context in which this process took place.