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Advances in methods and algorithms in a modern quantum chemistry program package

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TLDR
Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.
Abstract
Advances in theory and algorithms for electronic structure calculations must be incorporated into program packages to enable them to become routinely used by the broader chemical community. This work reviews advances made over the past five years or so that constitute the major improvements contained in a new release of the Q-Chem quantum chemistry package, together with illustrative timings and applications. Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.

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Journal ArticleDOI

Periodic boundary conditions for QM/MM calculations: Ewald summation for extended Gaussian basis sets.

TL;DR: An implementation of Ewald summation for use in mixed quantum mechanics/molecular mechanics (QM/MM) calculations is presented, which builds upon previous work by others that was limited to semi-empirical electronic structure for the QM region.
Book ChapterDOI

Noncovalent Interactions in Density Functional Theory

TL;DR: This review gives an account of the field from a chemical and didactic perspective, describing different approaches to the calculation of dispersion energies and comparing their accuracy, complexity, popularity, and general availability.
Journal ArticleDOI

MSCALE: A General Utility for Multiscale Modeling.

TL;DR: This work describes the extension of concurrent multiscale approaches, introduces a general framework for carrying out calculations, and describes its implementation into the CHARMM macromolecular modeling package, termed MSCALE.
Journal ArticleDOI

New algorithms for iterative matrix-free eigensolvers in quantum chemistry

TL;DR: This work presents two algorithms suitable for calculating excited states that are close to a specified energy shift (interior eigenvalues) and a recently developed solver based on the Davidson algorithm, a diagonalization procedure commonly used in quantum‐chemical calculations.
Journal ArticleDOI

Nature of noncovalent interactions in catenane supramolecular complexes: Calibrating the MM3 force field with ab initio, DFT, and SAPT methods

TL;DR: Examination of the design and assembly of mechanically interlocked molecules using molecular mechanics (MM3), ab initio methods (HF, MP2), several versions of density functional theory (DFT) (B3LYP, M0X), and the dispersion-corrected method DFT-D3 indicates that the MM3 calculated complexation energies agree qualitatively with the energetic ordering from DFSAPT calculations with an aug-cc-pVTZ basis.
References
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Journal ArticleDOI

Density‐functional thermochemistry. III. The role of exact exchange

TL;DR: In this article, a semi-empirical exchange correlation functional with local spin density, gradient, and exact exchange terms was proposed. But this functional performed significantly better than previous functionals with gradient corrections only, and fits experimental atomization energies with an impressively small average absolute deviation of 2.4 kcal/mol.
Journal ArticleDOI

Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen

TL;DR: In this paper, a detailed study of correlation effects in the oxygen atom was conducted, and it was shown that primitive basis sets of primitive Gaussian functions effectively and efficiently describe correlation effects.

疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

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TL;DR: PfPMP1)与感染红细胞、树突状组胞以及胎盘的单个或多个受体作用,在黏附及免疫逃避中起关键的作�ly.
Journal ArticleDOI

General atomic and molecular electronic structure system

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