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Advances in methods and algorithms in a modern quantum chemistry program package

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TLDR
Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.
Abstract
Advances in theory and algorithms for electronic structure calculations must be incorporated into program packages to enable them to become routinely used by the broader chemical community. This work reviews advances made over the past five years or so that constitute the major improvements contained in a new release of the Q-Chem quantum chemistry package, together with illustrative timings and applications. Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.

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Mechanistic Insights into a Classic Wonder Drug—Aspirin

TL;DR: Computational results confirmed that aspirin would be 10–100 times more potent against COX-1 than againstCOX-2, and revealed that this inhibition specificity between the two COX isoforms can be attributed mainly to the difference in kinetics rate of the covalent inhibition reaction, not the aspirin-binding step.
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Insights into the Kinetics of Cracking and Dehydrogenation Reactions of Light Alkanes in H-MFI

TL;DR: In this article, a dispersion-corrected density functional, ωB97X-D, combined with a hybrid quantum mechanics/molecular mechanics (QM/MM) method applied to a cluster model of the zeolite was used to study cracking and dehydrogenation reactions of n-butane at two regions in H-MFI.
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A ‘clicked’ macrocyclic probe incorporating Binol as the signalling unit for the chiroptical sensing of anions

TL;DR: In this article, a macrocyclic chiroptical sensor for the detection of halide anions is described, with the Binol moiety acting as the CD signalling unit.
Journal ArticleDOI

Stacking and Spreading Interaction in N-Heteroaromatic Systems†

TL;DR: In this paper, the stabilization energies of stacked and hydrogen-bonded dimers of N-hetero-aromatic systems (pyridine, pyrazine, sym-triazine, and sym-tetrazine) have been computed using a benchmark quality coupled cluster through the perturbative triples (CCSD(T)) method at the estimated complete basis set (CBS) limit.
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Memory-assisted exciton diffusion in the chlorosome light-harvesting antenna of green sulfur bacteria

TL;DR: Despite the dynamical disorder effects on the electronic transitions of the bacteriochlorophylls, simulations show that the exciton delocalizes over the entire aggregate in about 200 fs, and exciton diffusion in the chlorosome is found to be highly anisotropic with the preferential transfer toward the baseplate, which is the next functional element in the photosynthetic system.
References
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Journal ArticleDOI

Density‐functional thermochemistry. III. The role of exact exchange

TL;DR: In this article, a semi-empirical exchange correlation functional with local spin density, gradient, and exact exchange terms was proposed. But this functional performed significantly better than previous functionals with gradient corrections only, and fits experimental atomization energies with an impressively small average absolute deviation of 2.4 kcal/mol.
Journal ArticleDOI

Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen

TL;DR: In this paper, a detailed study of correlation effects in the oxygen atom was conducted, and it was shown that primitive basis sets of primitive Gaussian functions effectively and efficiently describe correlation effects.

疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

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Journal ArticleDOI

General atomic and molecular electronic structure system

TL;DR: A description of the ab initio quantum chemistry package GAMESS, which can be treated with wave functions ranging from the simplest closed‐shell case up to a general MCSCF case, permitting calculations at the necessary level of sophistication.
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