Journal ArticleDOI
Evolutionary relationships among species of Puccinia and Uromyces (Pucciniaceae, Uredinales) inferred from partial protein coding gene phylogenies
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TLDR
This work presents phylogenetic analyses based on sequence data from the translation elongation factor 1alpha gene for over 60 species in the family Pucciniaceae and investigates evolutionary relationships between Puccinia and Uromyces.About:
This article is published in Fungal Biology.The article was published on 2007-02-01. It has received 73 citations till now. The article focuses on the topics: Uromyces & Pucciniaceae.read more
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One stop shop: backbones trees for important phytopathogenic genera: I (2014)
Kevin D. Hyde,R. Henrik Nilsson,S. Aisyah Alias,Hiran A. Ariyawansa,Jaime E. Blair,Lei Cai,Arthur W. A. M. de Cock,Asha J. Dissanayake,Sally L. Glockling,Ishani D. Goonasekara,Michał Gorczak,Matthias Hahn,Ruvishika S. Jayawardena,Jan A. L. van Kan,Matthew H. Laurence,C. André Lévesque,Xinghong Li,Jian-Kui Liu,Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Dimuthu S. Manamgoda,Frank N. Martin,Eric H. C. McKenzie,Alistair R. McTaggart,Peter E. Mortimer,Peter E. Mortimer,P. V. R. Nair,Julia Pawłowska,Tara L. Rintoul,Roger G. Shivas,Christoffel F.J. Spies,Brett A. Summerell,Paul J. Taylor,Razak B. Terhem,Razak B. Terhem,Dhanushka Udayanga,Niloofar Vaghefi,Grit Walther,Grit Walther,Mateusz Wilk,Marta Wrzosek,Jianchu Xu,Jianchu Xu,Jiye Yan,Nan Zhou +44 more
TL;DR: This study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, BasidiomyCota, Mucormycotina (Fungi), and Oomycota using recent molecular data, up-to-date names, and the latest taxonomic insights.
Journal ArticleDOI
Notes, outline and divergence times of Basidiomycota
Mao Qiang He,Mao Qiang He,Rui-Lin Zhao,Kevin D. Hyde,Dominik Begerow,Martin Kemler,Andrey Yurkov,Eric H. C. McKenzie,Olivier Raspé,Makoto Kakishima,Santiago Sánchez-Ramírez,Else C. Vellinga,Roy E. Halling,Viktor Papp,Ivan V. Zmitrovich,Bart Buyck,Damien Ertz,Nalin N. Wijayawardene,Bao-Kai Cui,Nathan Schoutteten,Xin Zhan Liu,Tai Hui Li,Yi Jian Yao,Xin Yu Zhu,An Qi Liu,Guo Jie Li,Ming Zhe Zhang,Zhi Lin Ling,Bin Cao,Vladimír Antonín,Teun Boekhout,Bianca Denise Barbosa da Silva,Eske De Crop,Cony Decock,Bálint Dima,Arun Kumar Dutta,Jack W. Fell,József Geml,Masoomeh Ghobad-Nejhad,Admir José Giachini,Tatiana Baptista Gibertoni,Sergio P. Gorjón,Danny Haelewaters,Danny Haelewaters,Shuang Hui He,Brendan P. Hodkinson,Egon Horak,Tamotsu Hoshino,Alfredo Justo,Young Woon Lim,Nelson Menolli,Armin Mešić,Jean-Marc Moncalvo,Jean-Marc Moncalvo,Gregory M. Mueller,László Nagy,R. Henrik Nilsson,Machiel E. Noordeloos,Jorinde Nuytinck,Takamichi Orihara,Cheewangkoon Ratchadawan,Mario Rajchenberg,Alexandre G. S. Silva-Filho,Marcelo Aloisio Sulzbacher,Zdenko Tkalčec,Ricardo Valenzuela,Annemieke Verbeken,Alfredo Vizzini,Felipe Wartchow,Tie Zheng Wei,Michael Weiß,Chang Lin Zhao,Paul M. Kirk +72 more
TL;DR: Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
Journal ArticleDOI
Diversity of Puccinia striiformis on Cereals and Grasses
TL;DR: This has been the case since 2000, where large-scale epidemics in warmer wheat-growing areas have been ascribed to the emergence of two closely related yellow rust strains with increased aggressiveness and tolerance to warm temperatures.
Journal ArticleDOI
Rust fungi and global change
TL;DR: While rusts thrive in high-humidity environments, they can also survive in desert habitats, and as a group their environmental tolerance is large, with no conclusive change in their overall prevalence predictable to date.
Journal ArticleDOI
Interrelationships of Food Safety and Plant Pathology: The Life Cycle of Human Pathogens on Plants
TL;DR: The life of human pathogens outside an animal host is highlighted, focusing on the role of plants, and areas that are ripe for future investigation are illustrated.
References
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Journal ArticleDOI
MODELTEST: testing the model of DNA substitution.
David Posada,Keith A. Crandall +1 more
TL;DR: The program MODELTEST uses log likelihood scores to establish the model of DNA evolution that best fits the data.
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A rapid DNA isolation procedure for small quantities of fresh leaf tissue
Edwin Pahlich,Chr. Gerlitz +1 more
TL;DR: From the kinetic data, it becomes evident that the reductive amination reaction is highly adaptive to the ammonium environment.
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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
TL;DR: An overview of the statistical methods, computational tools, and visual exploration modules for data input and the results obtainable in MEGA is provided.
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
TL;DR: A simplified scoring system is proposed that performs well for reducing CPU time and increasing the accuracy of alignments even for sequences having large insertions or extensions as well as distantly related sequences of similar length.
Journal ArticleDOI
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
TL;DR: A revised and updated classification for the families of the flowering plants is provided in this paper, which includes Austrobaileyales, Canellales, Gunnerales, Crossosomatales and Celastrales.