Genome Sequence of the Plant Growth-Promoting Rhizobacterium Pseudomonas putida S11
Paramasivan Ponraj,Manoharan Shankar,Devaraj Ilakkiam,Jeyaprakash Rajendhran,Paramasamy Gunasekaran +4 more
TLDR
The genome sequence of a plant growth-promoting rhizobacterium, Pseudomonas putida S11, is reported, with a G+C content of 62.4% and contains 6,076 protein-coding sequences.Abstract:
Here we report the genome sequence of a plant growth-promoting rhizobacterium, Pseudomonas putida S11. The length of the draft genome sequence is approximately 5,970,799 bp, with a G+C content of 62.4%. The genome contains 6,076 protein-coding sequences.read more
Citations
More filters
Journal ArticleDOI
Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction
TL;DR: It is argued that although making direct linkage of genomes to global phenomena is a significant challenge, many connections at intermediate scales are viable with integrated application of new systems biology approaches and powerful analytical and modelling techniques.
Journal ArticleDOI
"Omics" Tools for Better Understanding the Plant-Endophyte Interactions.
TL;DR: Genome sequencing, comparative genomics, microarray, next gen sequencing, metagenomics, metatranscriptomics are some of the techniques that are being used or can be used to unravel plant–endophyte relationship.
Journal ArticleDOI
Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1.
Andrea Firrincieli,Robert Otillar,Asaf Salamov,Jeremy Schmutz,Zareen Khan,Regina S. Redman,Neil David Fleck,Erika Lindquist,Igor V. Grigoriev,Sharon L. Doty +9 more
TL;DR: Author(s): Firrincieli, Andrea; Otillar, Robert; Salamov, Asaf; Schmutz, Jeremy; Khan, Zareen; Redman, Regina S; Fleck, Neil D; Lindquist, Erika; Grigoriev, Igor V; Doty, Sharon L
Journal ArticleDOI
Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium.
Cristina Andrés-Barrao,Feras F. Lafi,Intikhab Alam,Axel de Zélicourt,Abdul Aziz Eida,Ameerah Bokhari,Hanin S. Alzubaidy,Vladimir B. Bajic,Heribert Hirt,Maged M. Saad +9 more
TL;DR: Functional analysis of the genome of SA187 revealed the characteristics of a dualistic lifestyle of a bacterium that can adapt to different environments and promote the growth of plants, which provides a better understanding of the mechanisms involved in plant-microbe interaction.
Journal ArticleDOI
Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria
Sebastiàn Lòpez-Fernàndez,Paolo Sonego,Marco Moretto,Michael Pancher,Kristof Engelen,Ilaria Pertot,Andrea Campisano +6 more
TL;DR: A summary of the major differences that help in the drawing of the boundaries between harmless and harmful bacteria, in the spirit of contributing to a microbiological definition of endophyte is presented.
References
More filters
Journal ArticleDOI
The RAST Server: Rapid Annotations using Subsystems Technology
Ramy K. Aziz,Ramy K. Aziz,Daniela Bartels,Aaron A. Best,Matthew DeJongh,Terrence Disz,Terrence Disz,Robert Edwards,Kevin Formsma,Svetlana Gerdes,Elizabeth M. Glass,Michael Kubal,Folker Meyer,Folker Meyer,Gary J. Olsen,Gary J. Olsen,Robert Olson,Robert Olson,Andrei L. Osterman,Ross Overbeek,Leslie Klis McNeil,Daniel Paarmann,Tobias Paczian,Bruce Parrello,Gordon D. Pusch,Claudia I. Reich,Rick Stevens,Rick Stevens,Olga Vassieva,Veronika Vonstein,Andreas Wilke,Olga Zagnitko +31 more
TL;DR: A fully automated service for annotating bacterial and archaeal genomes that identifies protein-encoding, rRNA and tRNA genes, assigns functions to the genes, predicts which subsystems are represented in the genome, uses this information to reconstruct the metabolic network and makes the output easily downloadable for the user.
Journal ArticleDOI
Iron dynamics in the rhizosphere as a case study for analyzing interactions between soils, plants and microbes
TL;DR: Analysis of the complex interactions soils, plants and microbes represent also a unique opportunity to progress in the knowledge of the rhizosphere ecology, which requires merging complementary expertises and study strategies in soil science, plant biology and microbiology.
Journal ArticleDOI
Influence of siderophore pyoverdine synthesis and iron-uptake on abiotic and biotic surface colonization of Pseudomonas putida S11
TL;DR: The iron starvation tolerant mutant IST3 of Pseudomonasputida S11 exhibited enhanced pyoverdine-mediated iron uptake in minimal medium which significantly improved its biofilm formation, seed adhesion and competitive root colonization.