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Journal ArticleDOI

Heterogeneous nuclear ribonucleoproteins: role in RNA splicing.

TLDR
An essential role for proteins of the hnRNP complex in the splicing of mRNA precursors is indicated, and a 60S splicing complex does not form in a C protein-depleted nuclear extract.
Abstract
Splicing in vitro of a messenger RNA (mRNA) precursor (pre-mRNA) is inhibited by a monoclonal antibody to the C proteins (anti-C) of the heterogeneous nuclear RNA (hnRNA)-ribonucleoprotein (hnRNP) particles. This antibody, 4F4, inhibits an early step of the reaction: cleavage at the 3' end of the upstream exon and the formation of the intron lariat. In contrast, boiled 4F4, or a different monoclonal antibody (designated 2B12) to the C proteins, or antibodies to other hnRNP proteins (120 and 68 kilodaltons) and nonimmune mouse antibodies have no inhibitory effect. The 4F4 antibody does not prevent the adenosine triphosphate-dependent formation of a 60S splicing complex (spliceosome). Furthermore, the 60S splicing complex contains C proteins, and it can be immunoprecipitated with 4F4. Depletion of C proteins from the splicing extract by immunoadsorption with either of the two monoclonal antibodies to the C proteins (4F4 or 2B12) results in the loss of splicing activity, whereas mock-depletion with nonimmune mouse antibodies bodies has no effect. A 60S splicing complex does not form in a C protein-depleted nuclear extract. These results indicate an essential role for proteins of the hnRNP complex in the splicing of mRNA precursors.

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Citations
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Journal ArticleDOI

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

TL;DR: Individual-nucleotide resolution UV cross-linking and immunoprecipitation (iCLIP) data show that hnRNP C recognizes uridine tracts with a defined long-range spacing consistent with hmRNP particle organization, and integration of transcriptome-wide iCLIP data and alternative splicing profiles into an 'RNA map' indicates how the positioning of hn RNP particles determines their effect on the inclusion of alternative exons.
Journal ArticleDOI

Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2

TL;DR: When messenger RNA precursors (pre-mRNAs) containing alternative 5' splice sites are spliced in vitro, the relative concentrations of the heterogeneous ribonucleoprotein (hnRNP) A1 and the essential splicing factor SF2 precisely determine which 5'splice site is selected.
Journal ArticleDOI

Probing the structure of RNAs in solution

TL;DR: In this paper, the various structure probes used so far are described, and their utilization is discussed.
Journal ArticleDOI

The hnRNP family: insights into their role in health and disease

TL;DR: This review will discuss the current knowledge about the different hnRNP family members, focusing on their structural and functional divergence, and highlight their involvement in neurodegenerative diseases and cancer, and the potential to develop RNA-based therapies.
Journal ArticleDOI

Biochemical Mechanisms of Constitutive and Regulated Pre-mRNA Splicing

TL;DR: INTRODUCTION 560 SPLICING PATHWAy 560 The PARADIGM: AUTOCATALYTIC SPLICing of Group II InTRONS 560 SPLICEOSOME ASSEMBLY PATHWAY 561 The Vi snRNP-Binding Reaction 563 Entry of U4/U5/U6 snRNPs 565 Destabilization of V4 snRNA 565
References
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Journal ArticleDOI

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

TL;DR: A procedure for preparing extracts from nuclei of human tissue culture cells that directs accurate transcription initiation in vitro from class II promoters, including tRNA and Ad 2 VA, is developed.
Journal ArticleDOI

Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter

TL;DR: In this paper, a simple and efficient method for synthesizing pure single stranded RNAs of virtually any structure is described, based on the unusually specific RNA synthesis by bacteriophage SP6 RNA polymerase which initiates transcription exclusively at an SP6 promoter.
Journal ArticleDOI

A catalogue of splice junction sequences

TL;DR: The sequence CAAG/GTAGAGT was found to be a consensus of 139 exon-intron boundaries (or donor sequences) and (TC)nNCTAG/G was found of 130 intron-exon boundaries ( or acceptor sequences).
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Ovalbumin gene: evidence for a leader sequence in mRNA and DNA sequences at the exon-intron boundaries.

TL;DR: Selected regions of cloned EcoRI fragments of the chicken ovalbumin gene have been sequenced, and a previously unreported interruption in the DNA sequences coding for the 5' nontranslated region of the messenger has been discovered.
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Excision of an intact intron as a novel lariat structure during pre-mRNA splicing in vitro

TL;DR: Results imply that sequences within IVS1 actively participate in splicing, and it is proposed that the 5' end ofIVS1 is joined by a 2'-5' phosphodiester linkage to the A residue in the RNAase T1 oligonucleotide ACTCTCTCTG located 28-37 nucleotides upstream from the IVS 1 3' end.
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