C
Carl J. Rothfels
Researcher at University of California, Berkeley
Publications - 93
Citations - 7061
Carl J. Rothfels is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Phylogenetic tree & Fern. The author has an hindex of 34, co-authored 84 publications receiving 5437 citations. Previous affiliations of Carl J. Rothfels include University of British Columbia & Royal Botanical Gardens.
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Journal ArticleDOI
Phylotranscriptomic analysis of the origin and early diversification of land plants
Norman J. Wickett,Siavash Mirarab,Nam Nguyen,Tandy Warnow,Eric J. Carpenter,Naim Matasci,Saravanaraj Ayyampalayam,Michael S. Barker,J. Gordon Burleigh,Matthew A. Gitzendanner,Brad R. Ruhfel,Brad R. Ruhfel,Eric K. Wafula,Joshua P. Der,Sean W. Graham,Sarah Mathews,Michael Melkonian,Douglas E. Soltis,Douglas E. Soltis,Pamela S. Soltis,Pamela S. Soltis,Nicholas W. Miles,Carl J. Rothfels,Carl J. Rothfels,Lisa Pokorny,Lisa Pokorny,A. Jonathan Shaw,Lisa DeGironimo,Dennis W. Stevenson,Barbara Surek,Juan Carlos Villarreal,Béatrice Roure,Hervé Philippe,Hervé Philippe,Claude W. dePamphilis,Tao Chen,Michael K. Deyholos,Regina S. Baucom,Toni M. Kutchan,Megan M. Augustin,Jun Wang,Yong Zhang,Zhijian Tian,Zhixiang Yan,Xiaolei Wu,Xiao Sun,Gane Ka-Shu Wong,Jim Leebens-Mack +47 more
TL;DR: Strong and robust support is found for a sister-group relationship between land plants and one group of streptophyte green algae, the Zygnematophyceae, and suggests that phylogenetic hypotheses used to understand the evolution of fundamental plant traits should be reevaluated.
Journal ArticleDOI
A community-derived classification for extant lycophytes and ferns
Eric Schuettpelz,Harald Schneider,Alan R. Smith,Peter Hovenkamp,Jefferson Prado,Germinal Rouhan,Alexandre Salino,Michael A. Sundue,Thaís Elias Almeida,Barbara S. Parris,Emily B. Sessa,Ashley R. Field,André Luís de Gasper,Carl J. Rothfels,Michael D. Windham,Marcus Lehnert,Benjamin Dauphin,Atsushi Ebihara,Samuli Lehtonen,Pedro Bond Schwartsburd,Jordan S. Metzgar,Li-Bing Zhang,Li-Yaung Kuo,Patrick J. Brownsey,Masahiro Kato,Marcelo D. Arana,Francine Costa Assis,Michael S. Barker,David S. Barrington,Ho-Ming Chang,Yi-Han Chang,Yi-Shan Chao,Cheng-Wei Chen,De-Kui Chen,Wen-Liang Chiou,Vinícius Antonio de Oliveira Dittrich,Yi-Fan Duan,Jean-Yves Dubuisson,Donald R. Farrar,Susan Fawcett,Jose María Gabriel y Galán,Luiz Armando de Araújo Góes-Neto,Jason R. Grant,Amanda L. Grusz,Christopher H. Haufler,Warren D. Hauk,Hai He,Sabine Hennequin,Regina Y. Hirai,Layne Huiet,Michael Kessler,Petra Korall,Paulo H. Labiak,Anders Larsson,Blanca León,Chun-Xiang Li,Fay-Wei Li,Melanie A. Link-Pérez,Hong-Mei Liu,Ngan Thi Lu,Esteban I. Meza-Torres,Xin-Yuan Miao,Robbin C. Moran,Claudine M. Mynssen,Nathalie S. Nagalingum,Benjamin Øllgaard,Alison M. Paul,Jovani B. S. Pereira,Leon R. Perrie,M. Mónica Ponce,Tom A. Ranker,Christian Schulz,Wataru Shinohara,Alexander Shmakov,Erin M. Sigel,Filipe Soares de Souza,Lana da Silva Sylvestre,Weston Testo,Luz Amparo Triana-Moreno,Chie Tsutsumi,Hanna Tuomisto,Ivan A. Valdespino,Alejandra Vasco,Raquel Stauffer Viveros,Alan S. Weakley,Ran Wei,Stina Weststrand,Paul G. Wolf,George Yatskievych,Xiao-Gang Xu,Yue-Hong Yan,Liang Zhang,Xian-Chun Zhang,Xin-Mao Zhou +93 more
TL;DR: A modern, comprehensive classification for lycophytes and ferns, down to the genus level, utilizing a community‐based approach, that uses monophyly as the primary criterion for the recognition of taxa, but also aims to preserve existing taxa and circumscriptions that are both widely accepted and consistent with the understanding of pteridophyte phylogeny.
Journal ArticleDOI
Data access for the 1,000 Plants (1KP) project.
Naim Matasci,Ling-Hong Hung,Zhixiang Yan,Eric J. Carpenter,Norman J. Wickett,Siavash Mirarab,Nam Nguyen,Tandy Warnow,Saravanaraj Ayyampalayam,Michael S. Barker,J. G. Burleigh,Matthew A. Gitzendanner,Eric K. Wafula,Joshua P. Der,Claude W. dePamphilis,Béatrice Roure,Hervé Philippe,Hervé Philippe,Brad R. Ruhfel,Brad R. Ruhfel,Nicholas W. Miles,Sean W. Graham,Sarah Mathews,Barbara Surek,Michael Melkonian,Douglas E. Soltis,Pamela S. Soltis,Carl J. Rothfels,Carl J. Rothfels,Lisa Pokorny,Lisa Pokorny,Jonathan Shaw,Lisa DeGironimo,Dennis W. Stevenson,Juan Carlos Villarreal,Tao Chen,Toni M. Kutchan,Megan Rolf,Regina S. Baucom,Michael K. Deyholos,Ram Samudrala,Zhijian Tian,Xiaolei Wu,Xiao Sun,Yong Zhang,Jun Wang,Jim Leebens-Mack,Gane Ka-Shu Wong,Gane Ka-Shu Wong +48 more
TL;DR: How to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize the gene and species trees of the 1KP project.
Journal ArticleDOI
Recently Formed Polyploid Plants Diversify at Lower Rates
Itay Mayrose,Shing Hei Zhan,Carl J. Rothfels,Karen Magnuson-Ford,Michael S. Barker,Loren H. Rieseberg,Loren H. Rieseberg,Sarah P. Otto +7 more
TL;DR: Likelihood-based analyses indicate that polyploids generally exhibit lower speciation rates and higher extinction rates than diploids, providing the first quantitative corroboration of the dead-end hypothesis.
Journal ArticleDOI
Fern genomes elucidate land plant evolution and cyanobacterial symbioses
Fay-Wei Li,Fay-Wei Li,Paul Brouwer,Lorenzo Carretero-Paulet,Shifeng Cheng,Jan de Vries,Pierre-Marc Delaux,Ariana N. Eily,Nils Koppers,Li-Yaung Kuo,Zheng Li,Mathew Simenc,Ian Small,Eric K. Wafula,Stephany Angarita,Michael S. Barker,Andrea Bräutigam,Claude W. dePamphilis,Sven B. Gould,Prashant S. Hosmani,Yao Moan Huang,Bruno Huettel,Yoichiro Kato,Xin Liu,Steven Maere,Rose McDowell,Lukas A. Mueller,Klaas G.J. Nierop,Stefan A. Rensing,Tanner A. Robison,Carl J. Rothfels,Erin M. Sigel,Yue Song,Prakash R. Timilsena,Yves Van de Peer,Yves Van de Peer,Hongli Wang,Per K.I. Wilhelmsson,Paul G. Wolf,Xun Xu,Joshua P. Der,Henriette Schluepmann,Gane Ka-Shu Wong,Kathleen M. Pryer +43 more
TL;DR: The genomes of two fern species, Azolla filiculoides and Salvinia cucullata, are reported and insights into fern-specific whole-genome duplications, f Fern-specific insect-resistant gene evolution and fern–cyanobacterial symbiosis are provided.