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Open AccessJournal ArticleDOI

Noise Exposures Causing Hearing Loss Generate Proteotoxic Stress and Activate the Proteostasis Network

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TLDR
It is reported that overstimulation of the auditory system drives a robust cochlear proteotoxic stress response, and after two weeks of recovery, the cochlea selectively elevates the abundance of the protein synthesis machinery.
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This article is published in Cell Reports.The article was published on 2020-11-24 and is currently open access. It has received 28 citations till now. The article focuses on the topics: Proteostasis & Proteotoxicity.

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Molecular and cytological profiling of biological aging of mouse cochlear inner and outer hair cells

TL;DR: Using RNA-seq transcriptomic analyses of inner and outer cochlear hair cells (HCs) isolated from young and aged mice, this paper showed that HC aging is associated with changes in key molecular processes, including transcription, DNA damage, autophagy, and oxidative stress, as well as genes related to HC specialization.
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Localized Proteasomal Degradation: From the Nucleus to Cell Periphery

Xing Guo
- 29 Jan 2022 - 
TL;DR: Recent advances on the functions, regulations and targeting mechanisms of proteasomes, especially those localized to the nuclear condensates and membrane structures of the cell are summarized and the biological significance thereof in mediating compartmentalized protein degradation is discussed.
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The amino acid substitution affects cellular response to mistranslation.

TL;DR: It is predicted that the potential of mistranslation to exacerbate diseases caused by proteotoxic stress depends on the tRNA variant, and different naturally occurring mistranslating tRNAs have the potential to negatively influence specific diseases.
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Determining and interpreting protein lifetimes in mammalian tissues.

TL;DR: In this article , the authors summarized leading technical approaches and highlighted their strengths and weaknesses. And they also disambiguate frequently used terminology, illustrate recent mechanistic insights, and provide guidance for interpreting and validating protein turnover measurements.
References
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Journal ArticleDOI

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

TL;DR: It is shown that accurate gene-level abundance estimates are best obtained with large numbers of short single-end reads, and estimates of the relative frequencies of isoforms within single genes may be improved through the use of paired- end reads, depending on the number of possible splice forms for each gene.
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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.

TL;DR: The approach described in this manuscript provides a convenient method to interpret tandem mass spectra with known sequences in a protein database.
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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

TL;DR: In the latest version 10.5 of STRING, the biggest changes are concerned with data dissemination: the web frontend has been completely redesigned to reduce dependency on outdated browser technologies, and the database can now also be queried from inside the popular Cytoscape software framework.
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Large-scale analysis of the yeast proteome by multidimensional protein identification technology.

TL;DR: MudPIT was applied to the proteome of the Saccharomyces cerevisiae strain BJ5460 grown to mid-log phase and yielded the largest proteome analysis to date, identifying 131 proteins with three or more predicted transmembrane domains which allowed us to map the soluble domains of many of the integral membrane proteins.
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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

TL;DR: This work clarifies the preferred methodology by addressing four issues based on observed decoy hit frequencies: the major assumptions made with this database search strategy are reasonable, concatenated target-decoy database searches are preferable to separate target and decoydatabase searches, and the theoretical error associated with target-Decoy false positive (FP) rate measurements can be estimated.
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Trending Questions (1)
What's the mechanism that noise damage cochlea?

Exposure to loud noise causes proteotoxicity in the cochlea, leading to accumulation of proteins and activation of the proteostasis network.