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Non‐coding RNAs: regulators of disease

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TLDR
The biology of ncRNAs is reviewed, focusing on the fundamental mechanisms by which nc RNAs facilitate normal development and physiology and, when dysfunctional, underpin disease, and the need to move beyond the confines of protein‐coding genes.
Abstract
For 50 years the term 'gene' has been synonymous with regions of the genome encoding mRNAs that are translated into protein. However, recent genome-wide studies have shown that the human genome is pervasively transcribed and produces many thousands of regulatory non-protein-coding RNAs (ncRNAs), including microRNAs, small interfering RNAs, PIWI-interacting RNAs and various classes of long ncRNAs. It is now clear that these RNAs fulfil critical roles as transcriptional and post-transcriptional regulators and as guides of chromatin-modifying complexes. Here we review the biology of ncRNAs, focusing on the fundamental mechanisms by which ncRNAs facilitate normal development and physiology and, when dysfunctional, underpin disease. We also discuss evidence that intergenic regions associated with complex diseases express ncRNAs, as well as the potential use of ncRNAs as diagnostic markers and therapeutic targets. Taken together, these observations emphasize the need to move beyond the confines of protein-coding genes and highlight the fact that continued investigation of ncRNA biogenesis and function will be necessary for a comprehensive understanding of human disease.

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The emergence of lncRNAs in cancer biology.

TL;DR: This review highlights the emerging impact of ncRNAs in cancer research, with a particular focus on the mechanisms and functions of lncRNAs.
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The functional role of long non-coding RNA in human carcinomas

TL;DR: The emerging functional role of lncRNAs in human cancer is highlighted and molecular mechanisms by which these RNA species function are described, providing insight into the functional roles they may play in tumorigenesis.
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Transcriptional Regulation and Its Misregulation in Disease

TL;DR: Recent advances in understanding of transcriptional regulation are reviewed and how these have provided new insights into transcriptional misregulation in disease are discussed.
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On the classification of long non - coding RNAs

TL;DR: Classification methods of lncRNAs are summarized according to their four major features, namely, genomic location and context, effect exerted on DNA sequences, mechanism of functioning and their targeting mechanism, and the view on potential further studies.
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Transcriptional and epigenetic mechanisms of addiction

TL;DR: Multiple mechanisms by which drugs alter the transcriptional potential of genes are reviewed, including alterations in the accessibility of genes within their native chromatin structure induced by histone tail modifications and DNA methylation, and the regulation of gene expression by non-coding RNAs.
References
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Mouse model of split hand/foot malformation type I.

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Evolution, biogenesis and function of promoter-associated RNAs.

TL;DR: It is suggested that tiRNAs may be intimately connected RNAPII backtracking, nucleosome marking and gene regulation, a class of 18 nucleotide small RNA conserved from insects to mammals.
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