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Open AccessJournal ArticleDOI

Raincloud plots: a multi-platform tool for robust data visualization

TLDR
This tutorial paper provides basic demonstrations of the strength of raincloud plots and similar approaches, outline potential modifications for their optimal use, and provides open-source code for their streamlined implementation in R, Python and Matlab.
Abstract
Across scientific disciplines, there is a rapidly growing recognition of the need for more statistically robust, transparent approaches to data visualization. Complementary to this, many scientists have called for plotting tools that accurately and transparently convey key aspects of statistical effects and raw data with minimal distortion. Previously common approaches, such as plotting conditional mean or median barplots together with error-bars have been criticized for distorting effect size, hiding underlying patterns in the raw data, and obscuring the assumptions upon which the most commonly used statistical tests are based. Here we describe a data visualization approach which overcomes these issues, providing maximal statistical information while preserving the desired 'inference at a glance' nature of barplots and other similar visualization devices. These "raincloud plots" can visualize raw data, probability density, and key summary statistics such as median, mean, and relevant confidence intervals in an appealing and flexible format with minimal redundancy. In this tutorial paper, we provide basic demonstrations of the strength of raincloud plots and similar approaches, outline potential modifications for their optimal use, and provide open-source code for their streamlined implementation in R, Python and Matlab ( https://github.com/RainCloudPlots/RainCloudPlots). Readers can investigate the R and Python tutorials interactively in the browser using Binder by Project Jupyter.

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Biophysical and Mechanistic Models for Disease-Causing Protein Variants.

TL;DR: This work focuses on the role of changes inprotein stability as a driver for disease, and how experiments, biophysical models, and computation are providing a framework for understanding and predicting how changes in protein sequence affect cellular protein stability.
Journal ArticleDOI

The Psychological Impact of 'Mild Lockdown' in Japan during the COVID-19 Pandemic: A Nationwide Survey under a Declared State of Emergency.

TL;DR: Psychological distress severity was influenced by specific interactional structures of risk factors: high loneliness, poor interpersonal relationships, COVID-19-related sleeplessness and anxiety, deterioration of household economy, and work and academic difficulties.
Journal ArticleDOI

Me, myself, bye: regional alterations in glutamate and the experience of ego dissolution with psilocybin

TL;DR: It is demonstrated that psilocybin induced region-dependent alterations in glutamate, which predicted distortions in the subjective experience of one’s self (ego dissolution), which may provide a neurochemical basis for therapeutic effects as witnessed in ongoing clinical trials.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
Journal ArticleDOI

The visual display of quantitative information

TL;DR: Med sin høye kompetanse innen informasjonsgrafikk blir Edward Tufte i dag sett på som en av de fremste pioneerene innen faget, og han har blitt tildelt over 40 priser for sine verker.
Book

Graphical Methods for Data Analysis

TL;DR: This paper presents a meta-modelling framework for developing and assessing regression models for multivariate and multi-dimensional data distributions and describes the distribution of a set of data.
Journal ArticleDOI

Violin plots : A box plot-density trace synergism

TL;DR: A proposed further adaptation, the violin plot, pools the best statistical features of alternative graphical representations of batches of data and adds the information available from local density estimates to the basic summary statistics inherent in box plots.
Journal ArticleDOI

Beanplot: A Boxplot Alternative for Visual Comparison of Distributions

TL;DR: A beanplot is an alternative to the boxplot for visual comparison of univariate data between groups and is easy to compare different groups of data in a beanplot and to see if a group contains enough observations to make the group interesting from a statistical point of view.
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