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The Complete Genome Sequence and Analysis of the Epsilonproteobacterium Arcobacter butzleri

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TLDR
The presence of pathways and loci associated often with non-host-associated organisms, as well as genes associated with virulence, suggests that A. butzleri is a free-living, water-borne organism that might be classified rightfully as an emerging pathogen.
Abstract
Background Arcobacter butzleri is a member of the epsilon subdivision of the Proteobacteria and a close taxonomic relative of established pathogens, such as Campylobacter jejuni and Helicobacter pylori. Here we present the complete genome sequence of the human clinical isolate, A. butzleri strain RM4018.

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Genomic islands: tools of bacterial horizontal gene transfer and evolution.

TL;DR: Genomic islands play a crucial role in the evolution of a broad spectrum of bacteria as they are involved in the dissemination of variable genes, including antibiotic resistance and virulence genes leading to generation of hospital ‘superbugs’, as well as catabolic genes lead to formation of new metabolic pathways.
Journal ArticleDOI

Taxonomy, Epidemiology, and Clinical Relevance of the Genus Arcobacter

TL;DR: The genus Arcobacter has become increasingly important because its members are being considered emergent enteropathogens and/or potential zoonotic agents as well as on their virulence potential and implication in human and animal diseases.
Journal ArticleDOI

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata.

TL;DR: An increase in diversity as well as a significant shift in community structure is determined in Montastraea faveolata colonies displaying phenotypic signs of White Plague Disease type II (WPD-II), and the possibility that a disease of yet to be determined etiology may have affected M. favelata colonies and resulted in an increase in opportunistic pathogens is discussed.
Journal ArticleDOI

Peptidoglycan Crosslinking Relaxation Promotes Helicobacter pylori's Helical Shape and Stomach Colonization

TL;DR: These findings suggest that the coordinated action of multiple proteins relaxes peptidoglycan crosslinking, enabling helical cell curvature and twist, required for robust colonization of the stomach in spite of normal directional motility.

AUTHOR'S CORRECTION Unique Features of a Highly Pathogenic Campylobacter jejuni Strain

TL;DR: A number of unique genetic features which may confer specific metabolic and pathogenic properties on this strain are identified and regions of the C. jejuni genome that are hot spots for the integration of horizontally acquired genetic material are identified.
References
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Journal ArticleDOI

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

TL;DR: A program is described, tRNAscan-SE, which identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases.
Journal ArticleDOI

Base-calling of automated sequencer traces using Phred. I. accuracy assessment

TL;DR: In this article, a base-calling program for automated sequencer traces, phred, with improved accuracy was proposed. But it was not shown to achieve a lower error rate than the ABI software, averaging 40%-50% fewer errors in the data sets examined independent of position in read, machine running conditions, or sequencing chemistry.
Book

Escherichia coli and Salmonella :cellular and molecular biology

TL;DR: The Enteric Bacterial Cell and the Age of Bacteria Variations on a Theme by Escherichia is described.
Journal ArticleDOI

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

TL;DR: The ability to estimate a probability of error for each base-call, as a function of certain parameters computed from the trace data, is developed and implemented in the base-calling program.
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