A
Adrian E. Platts
Researcher at New York University
Publications - 62
Citations - 11134
Adrian E. Platts is an academic researcher from New York University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 21, co-authored 58 publications receiving 8559 citations. Previous affiliations of Adrian E. Platts include University of Marburg & Cold Spring Harbor Laboratory.
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Journal ArticleDOI
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani,Adrian E. Platts,Le Lily Wang,M. Coon,Tung T. Nguyen,Luan Wang,Susan Land,Xiangyi Lu,Douglas M. Ruden +8 more
TL;DR: It appears that the 5′ and 3′ UTRs are reservoirs for genetic variations that changes the termini of proteins during evolution of the Drosophila genus.
Journal ArticleDOI
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Tanja Slotte,Tanja Slotte,Khaled M. Hazzouri,Khaled M. Hazzouri,J. Arvid Ågren,Daniel Koenig,Florian Maumus,Ya-Long Guo,Kim A. Steige,Adrian E. Platts,Juan S. Escobar,L. Killian Newman,Wei Wang,Terezie Mandáková,Emilio Vello,Lisa M. Smith,Stefan R. Henz,Joshua G. Steffen,Joshua G. Steffen,Shohei Takuno,Shohei Takuno,Yaniv Brandvain,Graham Coop,Peter Andolfatto,Tina T. Hu,Mathieu Blanchette,Richard M. Clark,Hadi Quesneville,Magnus Nordborg,Brandon S. Gaut,Martin A. Lysak,Jerry Jenkins,Jane Grimwood,Jarrod Chapman,Simon E. Prochnik,Shengqiang Shu,Daniel S. Rokhsar,Daniel S. Rokhsar,Jeremy Schmutz,Detlef Weigel,Stephen I. Wright +40 more
TL;DR: The transition to selfing may be typified by parallel shifts in gene expression, along with a measurable reduction of purifying selection, similar to that seen in Arabidopsis, which self fertilization evolved about 1 million years ago.
Journal ArticleDOI
The butterfly plant arms-race escalated by gene and genome duplications.
Patrick P. Edger,Patrick P. Edger,Patrick P. Edger,Hanna M. Heidel-Fischer,Michaël Bekaert,Jadranka Rota,Gernot Glöckner,Gernot Glöckner,Adrian E. Platts,David G. Heckel,Joshua P. Der,Joshua P. Der,Eric K. Wafula,Michelle Tang,Johannes A. Hofberger,Ann Smithson,Jocelyn C. Hall,Matthieu Blanchette,Thomas E. Bureau,Stephen I. Wright,Claude W. dePamphilis,M. Eric Schranz,Michael S. Barker,Gavin C. Conant,Niklas Wahlberg,Heiko Vogel,J. Chris Pires,Christopher W. Wheat +27 more
TL;DR: The coevolutionary interactions between plants and butterflies are examined, and evidence for an escalating evolutionary arms-race is uncovered, providing an important connection between the origins of biodiversity, coev evolution, and the role of gene and genome duplications as a substrate for novel traits.
Journal ArticleDOI
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
Annabelle Haudry,Adrian E. Platts,Emilio Vello,Douglas R. Hoen,Mickael Leclercq,Robert J. Williamson,Ewa Forczek,Zoé Joly-Lopez,Joshua G. Steffen,Khaled M. Hazzouri,Ken Dewar,John R. Stinchcombe,Daniel J. Schoen,Xiaowu Wang,Jeremy Schmutz,Christopher D. Town,Patrick P. Edger,J. Chris Pires,Karen S. Schumaker,David E. Jarvis,Terezie Mandáková,Martin A. Lysak,Erik van den Bergh,M. Eric Schranz,Paul M. Harrison,Alan M. Moses,Thomas E. Bureau,Stephen I. Wright,Mathieu Blanchette +28 more
TL;DR: In this paper, the authors report sequencing of genomes from three Brassicaceae species (Leavenworthia alabamica, Sisymbrium irio and Aethionema arabicum) and their joint analysis with six previously sequenced crucifer genomes.
Journal ArticleDOI
Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences
Ali Arpanahi,Martin H. Brinkworth,David Iles,Stephen A. Krawetz,Agnieszka Paradowska,Adrian E. Platts,Myriam Saida,Klaus Steger,Philip Tedder,David Miller +9 more
TL;DR: The results show unequivocally that, in contrast to the endonuclease-resistant sperm chromatin packaged by protamines, regions of increased end onuclease sensitivity are closely associated with gene regulatory regions, including many promoter sequences and sequences recognized by CCCTC-binding factor (CTCF).