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Andrew Tritt
Researcher at Lawrence Berkeley National Laboratory
Publications - 28
Citations - 2350
Andrew Tritt is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 13, co-authored 22 publications receiving 1836 citations. Previous affiliations of Andrew Tritt include University of California, Davis & University of Wisconsin-Madison.
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Journal ArticleDOI
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Annegret Kohler,Annegret Kohler,Alan Kuo,László Nagy,László Nagy,Emmanuelle Morin,Emmanuelle Morin,Kerrie Barry,François Buscot,Björn Canbäck,Cindy Choi,Nicolas Cichocki,Nicolas Cichocki,Alicia Clum,Jan V. Colpaert,Alex Copeland,Maurício Dutra Costa,Jeanne Doré,Dimitrios Floudas,Mariangela Girlanda,Bernard Henrissat,Bernard Henrissat,Sylvie Herrmann,Jaqueline Hess,Nils Högberg,Tomas Johansson,Hassine-Radhouane Khouja,Kurt LaButti,Urs Lahrmann,Anthony Levasseur,Erika Lindquist,Anna Lipzen,Roland Marmeisse,Elena Martino,Elena Martino,Claude Murat,Claude Murat,Chew Yee Ngan,Uwe Nehls,Jonathan M. Plett,Jonathan M. Plett,Anne Pringle,Robin A. Ohm,Silvia Perotto,Martina Peter,Robert Riley,Francois Rineau,Francois Rineau,Joske Ruytinx,Asaf Salamov,Firoz Shah,Hui Sun,Mika T. Tarkka,Andrew Tritt,Claire Veneault-Fourrey,Claire Veneault-Fourrey,Alga Zuccaro,Alga Zuccaro,Anders Tunlid,Igor V. Grigoriev,David S. Hibbett,Francis Martin,Francis Martin +62 more
TL;DR: Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of myCorrhiza-induced genes.
Journal ArticleDOI
An integrated pipeline for de novo assembly of microbial genomes.
TL;DR: An assembly pipeline called A5 (Andrew And Aaron's Awesome Assembly pipeline) is presented that simplifies the entire genome assembly process by automating these stages, by integrating several previously published algorithms with new algorithms for quality control and automated assembly parameter selection.
Journal ArticleDOI
Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities.
László Nagy,Robert Riley,Andrew Tritt,Catherine Adam,Chris Daum,Dimitrios Floudas,Hui Sun,Jagjit S. Yadav,Jasmyn Pangilinan,Karl-Henrik Larsson,Kenji Matsuura,Kerrie Barry,Kurt LaButti,Rita Kuo,Robin A. Ohm,Robin A. Ohm,Sukanta S. Bhattacharya,Takashi Shirouzu,Yuko Yoshinaga,Francis Martin,Igor V. Grigoriev,David S. Hibbett +21 more
TL;DR: The results suggest that white-rot fungi evolved later in the Agaricomycetes, with the first class II peroxidases reconstructed in the ancestor of the Auriculariales and residual Agarics, and the origin of ligninolytic enzymes reconstructed.
Journal ArticleDOI
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
Dimitrios Floudas,Benjamin W. Held,Robert Riley,László Nagy,László Nagy,Gage Koehler,Anthony S. Ransdell,Hina Younus,Julianna Chow,Jennifer Chiniquy,Anna Lipzen,Andrew Tritt,Hui Sun,Sajeet Haridas,Kurt LaButti,Robin A. Ohm,Robin A. Ohm,Ursula Kües,Robert A. Blanchette,Igor V. Grigoriev,Robert E. Minto,David S. Hibbett +21 more
TL;DR: The genome sequences of the white- rot fungus Cylindrobasidium torrendii and the brown-rot fungus Fistulina hepatica both members of Agaricales are presented, combining comparative genomics and wood decay experiments to reinforce the idea that wood decay mechanisms are more diverse than initially thought.
Journal ArticleDOI
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum
Martina Peter,Annegret Kohler,Robin A. Ohm,Robin A. Ohm,Alan Kuo,Jennifer Krützmann,Emmanuelle Morin,Matthias Arend,Kerrie Barry,Manfred Binder,Cindy Choi,Alicia Clum,Alex Copeland,Nadine Grisel,Sajeet Haridas,Tabea Kipfer,Kurt LaButti,Erika Lindquist,Anna Lipzen,Renaud Maire,Barbara Meier,Sirma Mihaltcheva,Virginie Molinier,Claude Murat,Stefanie Pöggeler,C. Alisha Quandt,Christoph Sperisen,Andrew Tritt,Emilie Tisserant,Pedro W. Crous,Bernard Henrissat,Uwe Nehls,Simon Egli,Joseph W. Spatafora,Igor V. Grigoriev,Francis Martin +35 more
TL;DR: It is shown that the symbiotic genomic idiosyncrasies of ectomycorrhizal basidiomycetes are also present in C. geophilum with symbiosis-induced, taxon-specific genes of unknown function and reduced numbers of plant cell wall-degrading enzymes.