C
Chaochao Wu
Researcher at Pacific Northwest National Laboratory
Publications - 23
Citations - 1668
Chaochao Wu is an academic researcher from Pacific Northwest National Laboratory. The author has contributed to research in topics: Proteome & Biomarker discovery. The author has an hindex of 15, co-authored 23 publications receiving 1283 citations. Previous affiliations of Chaochao Wu include Environmental Molecular Sciences Laboratory & Chinese Academy of Sciences.
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Journal ArticleDOI
Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer
Hui Zhang,Tao Liu,Zhen Zhang,Samuel H. Payne,Bai Zhang,Jason E. McDermott,Jian-Ying Zhou,Vladislav A. Petyuk,Li Chen,Debjit Ray,Shisheng Sun,Feng Yang,Lijun Chen,Jing Wang,Punit Shah,Seong Won Cha,Paul Aiyetan,Sunghee Woo,Yuan Tian,Marina A. Gritsenko,Therese R. W. Clauss,Caitlin H. Choi,Matthew E. Monroe,Stefani N. Thomas,Song Nie,Chaochao Wu,Ronald J. Moore,Kun-Hsing Yu,David L. Tabb,David Fenyö,Vineet Bafna,Yue Wang,Henry Rodriguez,Emily S. Boja,Tara Hiltke,Robert Rivers,Lori J. Sokoll,Heng Zhu,Ie Ming Shih,Leslie Cope,Akhilesh Pandey,Bing Zhang,Michael Snyder,Douglas A. Levine,Richard D. Smith,Daniel W. Chan,Karin D. Rodland,Steven A. Carr,Michael A. Gillette,Karl R. Klauser,Eric Kuhn,D. R. Mani,Philipp Mertins,Karen A. Ketchum,Ratna R. Thangudu,Shuang Cai,Mauricio Oberti,Amanda G. Paulovich,Jeffrey R. Whiteaker,Nathan Edwards,Peter B. McGarvey,Subha Madhavan,Pei Wang,Gordon Whiteley,Steven J. Skates,Forest M. White,Christopher R. Kinsinger,Mehdi Mesri,Kenna M. Shaw,Stephen E. Stein,Paul A. Rudnick,Michael Snyder,Yingming Zhao,Xian Chen,David F. Ransohoff,Andrew N. Hoofnagle,Daniel C. Liebler,Melinda E. Sanders,Zhiao Shi,Robbert J.C. Slebos,Lisa J. Zimmerman,Sherri R. Davies,Li Ding,Matthew J. Ellis,R. Reid Townsend +84 more
TL;DR: A view of how the somatic genome drives the cancer proteome and associations between protein and post-translational modification levels and clinical outcomes in HGSC is provided.
Journal ArticleDOI
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry–Based Assays
Andrew N. Hoofnagle,Jeffrey R. Whiteaker,Steven A. Carr,Eric Kuhn,Tao Liu,Sam A. Massoni,Stefani N. Thomas,Raymond R. Townsend,Lisa J. Zimmerman,Emily S. Boja,Jing Chen,Daniel L. Crimmins,Sherri R. Davies,Yuqian Gao,Tara Hiltke,Karen A. Ketchum,Christopher R. Kinsinger,Mehdi Mesri,Matthew R. Meyer,Wei-Jun Qian,Regine M. Schoenherr,Mitchell G. Scott,Tujin Shi,Gordon Whiteley,John A. Wrobel,Chaochao Wu,Brad Ackermann,Ruedi Aebersold,David R. Barnidge,David M. Bunk,Nigel J. Clarke,Jordan B. Fishman,Russ P. Grant,Ulrike Kusebauch,Mark M. Kushnir,Mark S. Lowenthal,Robert L. Moritz,Hendrik Neubert,Scott D. Patterson,Alan L. Rockwood,John C. Rogers,Ravinder J. Singh,Jennifer E. Van Eyk,Steven H. Wong,Shucha Zhang,Daniel W. Chan,Xian Chen,Matthew J. Ellis,Daniel C. Liebler,Karin D. Rodland,Henry Rodriguez,Richard D. Smith,Zhen Zhang,Hui Zhang,Amanda G. Paulovich +54 more
TL;DR: The Clinical Proteomic Tumor Analysis Consortium of the National Cancer Institute has collaborated with clinical laboratorians, peptide manufacturers, metrologists, representatives of the pharmaceutical industry, and other professionals to develop a consensus set of recommendations for peptide procurement, characterization, storage, and handling.
Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer
Hui Zhang,Tao Liu,Zhen Zhang,Samuel H. Payne,Bai Zhang,Jason E. McDermott,Jian-Ying Zhou,Vladislav A. Petyuk,Li Chen,Debjit Ray,Shisheng Sun,Feng Yang,Lijun Chen,Jing Wang,Punit Shah,Seong Won Cha,Paul Aiyetan,Sunghee Woo,Yuan Tian,Marina A. Gritsenko,Therese R. W. Clauss,Caitlin H. Choi,Matthew E. Monroe,Stefani N. Thomas,Song Nie,Chaochao Wu,Ronald J. Moore,Kun-Hsing Yu,David L. Tabb,David Fenyö,Vineet Bafna,Yue Wang,Henry Rodriguez,Emily S. Boja,Tara Hiltke,Robert Rivers,Lori J. Sokoll,Heng Zhu,Ie Ming Shih,Leslie Cope,Akhilesh Pandey,Bing Zhang,Michael Snyder,Douglas A. Levine,Richard D. Smith,Daniel W. Chan,Karin D. Rodland,Steven A. Carr,Michael A. Gillette,Karl R. Klauser,Eric Kuhn,D. R. Mani,Philipp Mertins,Karen A. Ketchum,Ratna R. Thangudu,Shuang Cai,Mauricio Oberti,Amanda G. Paulovich,Jeffrey R. Whiteaker,Nathan Edwards,Peter B. McGarvey,Subha Madhavan,Pei Wang,Gordon Whiteley,Steven J. Skates,Forest M. White,Christopher R. Kinsinger,Mehdi Mesri,Kenna M. Shaw,Stephen E. Stein,Paul A. Rudnick,Michael Snyder,Yingming Zhao,Xian Chen,David F. Ransohoff,Andrew N. Hoofnagle,Daniel C. Liebler,Melinda E. Sanders,Zhiao Shi,Robbert J.C. Slebos,Lisa J. Zimmerman,Sherri R. Davies,Li Ding,Matthew J. Ellis,R. Reid Townsend +84 more
TL;DR: In this article, a detailed analysis of the molecular components and underlying mechanisms associated with ovarian cancer was provided, such as how different copy-number alterna-tions in the Proteome, the proteins associated with chromosomal instability, the sets of signalingpathways that diverse genome rearrangements converge on, and the ones associated with short overall survival.
Journal ArticleDOI
CPTAC Assay Portal: a repository of targeted proteomic assays
Jeffrey R. Whiteaker,Goran N. Halusa,Andrew N. Hoofnagle,Vagisha Sharma,Brendan MacLean,Ping Yan,John A. Wrobel,Jacob J. Kennedy,D. R. Mani,Lisa J. Zimmerman,Matthew R. Meyer,Mehdi Mesri,Henry Rodriguez,Amanda G. Paulovich,Susan E. Abbatiello,Emily S. Boja,Steven A. Carr,Daniel W. Chan,Xian Chen,Jing Chen,Sherri R. Davies,Matthew J. Ellis,David Fenyö,Tara Hiltke,K. A. Ketchum,Christopher R. Kinsinger,Eric Kuhn,Daniel C. Liebler,De Lin,Tao Liu,Michael Loss,Michael J. MacCoss,Wei-Jun Qian,Robert Rivers,Karin D. Rodland,Kelly V. Ruggles,Mitchell G. Scott,Richard D. Smith,Stefani N. Thomas,R. Reid Townsend,Gordon Whiteley,Chaochao Wu,Hui Zhang,Zhen Zhang +43 more
TL;DR: To address these issues, the Clinical Proteomic Tumor Analysis Consortium (CPTAC) of the National Cancer Institute has launched an Assay Portal to serve as a public repository of well-characterized quantitative, MS-based, targeted proteomic assays.
Journal ArticleDOI
A comprehensive and non-prefractionation on the protein level approach for the human urinary proteome: touching phosphorylation in urine
Qingrun Li,Ke-Xin Fan,Rongxia Li,Jie Dai,Chaochao Wu,Shilin Zhao,Jiarui Wu,Chia-Hui Shieh,Rong Zeng +8 more
TL;DR: This work developed a robust approach for exploring the human urinary proteome, which would provide a catalogue of urine proteins on a global scale and significantly extends current comprehension of urinary protein modification and its potential biological significance.