D
David Marshall
Researcher at James Hutton Institute
Publications - 98
Citations - 11347
David Marshall is an academic researcher from James Hutton Institute. The author has contributed to research in topics: Population & Gene. The author has an hindex of 43, co-authored 95 publications receiving 10370 citations. Previous affiliations of David Marshall include University of Birmingham & Scotland's Rural College.
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Journal ArticleDOI
Genome sequence and analysis of the tuber crop potato.
Xun Xu,Shengkai Pan,Shifeng Cheng,Bo Zhang,Mu D,Peixiang Ni,Gengyun Zhang,Shuang Yang,Ruiqiang Li,Jun Wang,Gisella Orjeda,Frank Guzman,Torres M,Roberto Lozano,Olga Ponce,Diana Martinez,De la Cruz G,Chakrabarti Sk,Patil Vu,Konstantin G. Skryabin,Boris B. Kuznetsov,Nikolai V. Ravin,Tatjana V. Kolganova,Alexey V. Beletsky,Andrey V. Mardanov,Di Genova A,Dan Bolser,David M. A. Martin,Li G,Yang Y,Hanhui Kuang,Hu Q,Xiong X,Gerard J. Bishop,Boris Sagredo,Nilo Mejía,Zagorski W,Robert Gromadka,Jan Gawor,Pawel Szczesny,Sanwen Huang,Zhang Z,Liang C,He J,Li Y,He Y,Xu J,Youjun Zhang,Xie B,Du Y,Qu D,Merideth Bonierbale,Marc Ghislain,Herrera Mdel R,Giovanni Giuliano,Marco Pietrella,Gaetano Perrotta,Paolo Facella,O'Brien K,Sergio Enrique Feingold,Barreiro Le,Massa Ga,Luis Aníbal Diambra,Brett R Whitty,Brieanne Vaillancourt,Lin H,Alicia N. Massa,Geoffroy M,Lundback S,Dean DellaPenna,Buell Cr,Sanjeev Kumar Sharma,David Marshall,Robbie Waugh,Glenn J. Bryan,Destefanis M,Istvan Nagy,Dan Milbourne,Susan Thomson,Mark Fiers,Jeanne M. E. Jacobs,Kåre Lehmann Nielsen,Mads Sønderkær,Marina Iovene,Giovana Augusta Torres,Jiming Jiang,Richard E. Veilleux,Christian W. B. Bachem,de Boer J,Theo Borm,Bjorn Kloosterman,van Eck H,Erwin Datema,Hekkert Bt,Aska Goverse,van Ham Rc,Richard G. F. Visser +96 more
TL;DR: The potato genome sequence provides a platform for genetic improvement of this vital crop and predicts 39,031 protein-coding genes and presents evidence for at least two genome duplication events indicative of a palaeopolyploid origin.
Journal ArticleDOI
A physical, genetic and functional sequence assembly of the barley genome
Klaus F. X. Mayer,Robbie Waugh,Peter Langridge,Timothy J. Close,Roger P. Wise,Andreas Graner,Takashi Matsumoto,Kazuhiro Sato,Alan H. Schulman,Ruvini Ariyadasa,Daniela Schulte,Naser Poursarebani,Ruonan Zhou,Burkhard Steuernagel,Martin Mascher,Uwe Scholz,Bu-Jun Shi,Kavitha Madishetty,Jan T. Svensson,Prasanna R. Bhat,Matthew J. Moscou,Josh Resnik,Gary J. Muehlbauer,Pete E. Hedley,Hui Liu,Jenny Morris,Zeev Frenkel,Avraham Korol,Hélène Bergès,Stefan Taudien,Marius Felder,Marco Groth,Matthias Platzer,Axel Himmelbach,Stefano Lonardi,Denisa Duma,Matthew Alpert,Francesa Cordero,Francesa Cordero,Marco Beccuti,Gianfranco Ciardo,Yaqin Ma,Steve Wanamaker,Federica Cattonaro,Vera Vendramin,Simone Scalabrin,Slobodanka Radovic,Rod A. Wing,Michele Morgante,Thomas Nussbaumer,Heidrun Gundlach,Mihaela Martis,Jesse Poland,Matthias Pfeifer,Cédric Moisy,Jaakko Tanskanen,Andrea Zuccolo,Manuel Spannagl,Joanne Russell,Arnis Druka,David Marshall,Micha Bayer,David Swarbreck,Dharanya Sampath,Sarah Ayling,Melanie Febrer,Mario Caccamo,Tsuyoshi Tanaka,Steve Wannamaker,Thomas Schmutzer,John W. S. Brown,John W. S. Brown,Geoffrey B. Fincher,Nils Stein +73 more
TL;DR: An integrated and ordered physical, genetic and functional sequence resource that describes the barley gene-space in a structured whole-genome context and suggests that post-transcriptional processing forms an important regulatory layer.
Journal ArticleDOI
TOPALi v2
Iain Milne,Dominik Lindner,Micha Bayer,Dirk Husmeier,Gráinne McGuire,David Marshall,Frank Wright +6 more
TL;DR: TOPALi v2 simplifies and automates the use of several methods for the evolutionary analysis of multiple sequence alignments and phylogenetic tree estimation using the Bayesian inference and maximum likelihood approaches.
Journal ArticleDOI
Development and implementation of high-throughput SNP genotyping in barley
Timothy J. Close,Prasanna R. Bhat,Prasanna R. Bhat,Stefano Lonardi,Yonghui Wu,Yonghui Wu,Nils Rostoks,Nils Rostoks,Luke Ramsay,Arnis Druka,Nils Stein,Jan T. Svensson,Jan T. Svensson,Steve Wanamaker,Serdar Bozdag,Mikeal L. Roose,Matthew J. Moscou,Matthew J. Moscou,Shiaoman Chao,Rajeev K. Varshney,Rajeev K. Varshney,Péter Szűcs,Kazuhiro Sato,Patrick M. Hayes,David E. Matthews,Andris Kleinhofs,Gary J. Muehlbauer,Joseph DeYoung,David Marshall,Kavitha Madishetty,Raymond D. Fenton,Pascal Condamine,Andreas Graner,Robbie Waugh +33 more
TL;DR: A high-density consensus genetic map of barley based only on complete and error-free datasets and genic markers, represented accurately by graphs and approximately by a best-fit linear order, and supported by a readily available SNP genotyping resource is presented in this paper.
Journal ArticleDOI
Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley
Jordi Comadran,Benjamin Kilian,Joanne Russell,Luke Ramsay,Nils Stein,Martin W. Ganal,Paul Shaw,Micha Bayer,William T. B. Thomas,David Marshall,Pete E. Hedley,Alessandro Tondelli,Nicola Pecchioni,Enrico Francia,Viktor Korzun,Alexander Walther,Robbie Waugh +16 more
TL;DR: The distribution of HvCEN alleles in a large collection of wild and landrace accessions indicates that this involved selection and enrichment of preexisting genetic variants rather than the acquisition of mutations after domestication.