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Kelly P. Williams
Researcher at Virginia Bioinformatics Institute
Publications - 16
Citations - 3387
Kelly P. Williams is an academic researcher from Virginia Bioinformatics Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 13, co-authored 15 publications receiving 3076 citations. Previous affiliations of Kelly P. Williams include Indiana University & Virginia Tech.
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Journal ArticleDOI
The genome of woodland strawberry ( Fragaria vesca )
Vladimir Shulaev,Daniel J. Sargent,Ross N. Crowhurst,Todd C. Mockler,Otto Folkerts,Arthur L. Delcher,Pankaj Jaiswal,Keithanne Mockaitis,Aaron Liston,Shrinivasrao P. Mane,Paul Burns,Thomas M. Davis,Janet P. Slovin,Nahla V. Bassil,Roger P. Hellens,Clive Evans,Tim Harkins,Chinnappa D. Kodira,Brian Desany,Oswald Crasta,Roderick V. Jensen,Andrew C. Allan,Andrew C. Allan,Todd P. Michael,João C. Setubal,Jean-Marc Celton,D. Jasper G. Rees,Kelly P. Williams,Sarah H. Holt,Juan Jairo Ruiz Rojas,Mithu Chatterjee,Bo Liu,Herman Silva,Lee A. Meisel,Avital Adato,Sergei A. Filichkin,Michela Troggio,Roberto Viola,Tia-Lynn Ashman,Hao Wang,Palitha Dharmawardhana,Justin Elser,Rajani Raja,Henry D. Priest,Douglas W. Bryant,Samuel E. Fox,Scott A. Givan,Larry J. Wilhelm,Sushma Naithani,Alan Christoffels,David Y. Salama,Jade Carter,Elena Lopez Girona,Anna Zdepski,Wenqin Wang,Randall A. Kerstetter,Wilfried Schwab,Schuyler S. Korban,Jahn Davik,Amparo Monfort,Beatrice Denoyes-Rothan,Pere Arús,Ron Mittler,Barry S. Flinn,Asaph Aharoni,Jeffrey L. Bennetzen,Steven L. Salzberg,Allan W. Dickerman,Riccardo Velasco,Mark Borodovsky,Richard E. Veilleux,Kevin M. Folta +71 more
TL;DR: New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted, and macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes.
Journal ArticleDOI
Complete Genome Sequence of Citrus Huanglongbing Bacterium, ‘Candidatus Liberibacter asiaticus’ Obtained Through Metagenomics
Yongping Duan,Lijuan Zhou,David G. Hall,Wenbin Li,Harshavardhan Doddapaneni,Harshavardhan Doddapaneni,Hong Lin,Li Liu,Cheryl M. Vahling,Dean W. Gabriel,Kelly P. Williams,Allan W. Dickerman,Yijun Sun,Tim R. Gottwald +13 more
TL;DR: Multi-protein phylogenetic analysis confirmed 'Ca. L. asiaticus' as an early-branching and highly divergent member of the family Rhizobiaceae, the first genome sequence of an uncultured alpha-proteobacteria that is both an intracellular plant pathogen and insect symbiont.
Journal ArticleDOI
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
Rami A. Dalloul,Julie A. Long,Aleksey V. Zimin,Luqman Aslam,Kathryn Beal,Le Ann Blomberg,Pascal Bouffard,David W. Burt,Oswald Crasta,Richard P. M. A. Crooijmans,Kristal L. Cooper,Roger A. Coulombe,Supriyo De,Mary E. Delany,Jerry B. Dodgson,Jennifer J Dong,Clive Evans,Karin M. Frederickson,Paul Flicek,Liliana Florea,Otto Folkerts,Martien A. M. Groenen,Tim Harkins,Javier Herrero,Steve Hoffmann,Hendrik-Jan Megens,Andrew Jiang,Pieter J. de Jong,Peter K. Kaiser,Heebal Kim,Kyu-Won Kim,Sungwon Kim,David Langenberger,Mi-Kyung Lee,Taeheon Lee,Shrinivasrao P. Mane,Guillaume Marçais,Manja Marz,Manja Marz,A. P. McElroy,Thero Modise,Mikhail Nefedov,Cedric Notredame,Ian R. Paton,William S. Payne,Geo Pertea,Dennis Prickett,Daniela Puiu,Dan Qioa,Emanuele Raineri,Magali Ruffier,Steven L. Salzberg,Michael C. Schatz,Chantel F. Scheuring,Carl J. Schmidt,Steven Schroeder,Stephen M. J. Searle,Edward J. Smith,Jacqueline Smith,Tad S. Sonstegard,Peter F. Stadler,Hakim Tafer,Hakim Tafer,Zhijian Jake Tu,Curtis P. Van Tassell,Albert J. Vilella,Kelly P. Williams,James A. Yorke,Liqing Zhang,Hong-Bin Zhang,Xiaojun Zhang,Yang Zhang,Kent M. Reed +72 more
TL;DR: The combined application of next-generation sequencing platforms has provided an economical approach to unlocking the potential of the turkey genome.
Journal ArticleDOI
Phylogeny of Gammaproteobacteria
Kelly P. Williams,Joseph J. Gillespie,Bruno W. S. Sobral,Eric K. Nordberg,Eric E. Snyder,Joshua M. Shallom,Allan W. Dickerman +6 more
TL;DR: A telescoping multiprotein approach is applied to the phylogeny of the large bacterial class Gammaproteobacteria, based on a set of 356 protein families for the whole class and even larger sets for each of four cohesive subregions of the tree.
Journal ArticleDOI
A Robust Species Tree for the Alphaproteobacteria
TL;DR: Pelagibacter genes will serve as useful additions to the bacterial outgroup in future evolutionary studies of mitochondrial genes, including those that have transferred to the eukaryotic nucleus.